Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq4511 93.3 8e-14 >seq4511 Length=1110828 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || || || || |||||| | || || ||||| ||||| || ||||||| |||||||| Sbjct 437988 GCTTTCTTCGGCGCTCAGATGAACTCGTTTATTCATGTCATCATGTACATGTATTATGGA 438047 Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| |||| || ||||| ||| || ||||||||||| || | || || Sbjct 438048 TTAGCTGCCTGTGGCCCTAAATTTCAGAA-GTACCTGTGGTGGAAACGATACTTGACCAT 438106 Query 52176 AATGCAGTTGGTA 52188 | ||||||||||| Sbjct 438107 ATTGCAGTTGGTA 438119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922836130090160