Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq853 455 2e-123 seq1787 111 1e-19 >seq853 Length=4682424 Score = 455 bits (504), Expect = 2e-123 Identities = 706/1001 (71%), Gaps = 12/1001 (1%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGC-TTCAAGGCCCAAAGGAAGTTCATACAGTT 107686 ||||| ||||| || || ||||| ||||| |||| || | || |||||| | || Sbjct 2753312 TACCTGAACATGACGAGGGACTGC-AGCGCCTTCAGGGAGACACGGCGGTTCATCGAATT 2753370 Query 107687 CCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAA 107746 ||| |||||| |||| || ||| |||||||| |||||||| ||||| |||| | || Sbjct 2753371 CCCCCTGAGTCAAGAGGAAGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACAACAA 2753430 Query 107747 GATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGT 107806 ||||||| ||||| ||||| ||||| |||| ||||| || ||||| | ||||| | Sbjct 2753431 AATTGAAATGTTTGAGCGGCTTCTGCGGTCCGTCTATGCTCCGCAGAATGTGTACTGCAT 2753490 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 |||| | || |||||||||| | ||| | ||||| || |||||| | || Sbjct 2753491 CCACATTGACCGCAAGTCCCCAGCTGCCTTCCAGGAGGCTGTACGGGCCATAGCAGCTTG 2753550 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 ||||||||||||||| |||| || | ||| |||||| ||||||||||||||| | Sbjct 2753551 CTTCCCCAATGTCTTTGTGGCTAGCCATCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCG 2753610 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTA 107986 |||| |||||||| ||||| ||| | ||| || | |||||| | ||||||||| || Sbjct 2753611 GTTGCAGGCTGACCTCAACTGCATGCAGGACCTGTTACAGAGCCCCGTGCCATGGCGCTA 2753670 Query 107987 CTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGC 108046 | || || || || || || || || ||||| |||||||||| |||||| ||| || Sbjct 2753671 TCTCCTCAACACCTGTGGCACCGATTTTCCCATCAAGACCAATGGCGAGATCATCCGTGC 2753730 Query 108047 CCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaa 108106 ||| ||| | | |||| |||||||||||||||| ||| || || | ||| | Sbjct 2753731 CCTGAAGGTCCTACAGGGACAGAACAGTATGGAGTCAGAGAGGCCCTCAGCCATCAAGCA 2753790 Query 108107 aaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAA 108166 | ||||||||||||| | | || ||| |||| | | | || || ||| | ||| Sbjct 2753791 GGAGCGCTGGAAATACCACCACGAAGTGGCAGAGTCCATCTCCCGGACAGGCACAAAGAA 2753850 Query 108167 GGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCG 108226 | ||||| || | || | |||||||||||||| || || || | |||| | | | Sbjct 2753851 AGGGCCTCCACCCCACAACTATCCCATGTTCACAGGCAACGCATACATCGTGGTCACAAG 2753910 Query 108227 AGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAA 108286 ||||| || || || |||| | |||| | | | || | | |||| |||| ||| Sbjct 2753911 GGCCTTCGTGCAGCACATCTTTCAGGACCCCACAGCACAGAAGTTCCTTGAGTGGGCCAA 2753970 Query 108287 AGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGGATG 108344 || ||||| |||||||| || || | |||||||| || | || ||| ||| || Sbjct 2753971 GGATACCTACAGCCCCGATGAGCATGTTTGGGCCACTCTCAACCGCATGCCTGGTG--TG 2754028 Query 108345 CCTGGCTC--TG-TTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCC 108401 || ||| | || ||| || | ||||| ||| |||| ||||||| |||| | || Sbjct 2754029 CCAGGCGCCATGCCTCCGAGTGA---CAAGTTCCACCTCTCGGACATGAATGCCCTGCCC 2754085 Query 108402 AGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCC 108461 | || ||||| ||||||||| ||||| || ||||| ||| ||||| || ||||| Sbjct 2754086 CGCCTGGTCAAATGGCAGTACATGGAGGGTGACACCAGCAAGGGCGCGCCCTACCCACCC 2754145 Query 108462 TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATT 108521 ||| |||| || | | | || ||||||| ||||| | || ||| ||| |||||| Sbjct 2754146 TGCACTGGCCAGCACCAGCGTTCCGTCTGCATCTACGGAGTGGGCGACGTGTCCTGGATG 2754205 Query 108522 CTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTG 108581 |||||| | || ||||||||||| |||||||| ||||| |||||||||| || | | Sbjct 2754206 CTCCAGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCCAGGTGGATGATGCCGCCATT 2754265 Query 108582 CAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 ||||| | || || |||| || || |||||| |||| || Sbjct 2754266 CAGTGTCTCGAGGAACACCTGCGCCACAAGGCCCTCTACGG 2754306 >seq1787 Length=274390 Score = 111 bits (122), Expect = 1e-19 Identities = 202/290 (70%), Gaps = 12/290 (4%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| ||||||||||| ||||| || || |||| ||||| || ||||| | Sbjct 104881 TTGAGTGGGCGAAAGACACCTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA 104940 Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | | || || | |||||| || || |||||| | | || |||||| Sbjct 104941 -TCCCTGAAGTACCAGGTGCAGTTCCTTCTAGTAAC---AAGTATGATGTTTCTGACATG 104996 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGA--TGTCAGCATGGGGG 108447 | ||| | |||||| | ||||||||||||||| || || || |||| || || | Sbjct 104997 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGCGACATGTC--CAAAGGTG 105054 Query 108448 CGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGG 108507 | || || |||| ||| |||| | ||| | | |||| ||| || | || | Sbjct 105055 CACCCTACCCACCATGCAGTGGAGTTCATGTTCGCTCTGTCTGTGTTTTTGGCGTAGGAG 105114 Query 108508 ACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||| ||||||| || || ||||| ||| |||| || |||||||||||| Sbjct 105115 ACCTGAACTGGATGCTACAAAACCACCACTTCTTTGCTAACAAGTTTGAC 105164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348136141584396