Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq3492 114 1e-20 >seq3492 Length=1229997 Score = 114 bits (126), Expect = 1e-20 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 20376 CTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATT 20435 |||||| ||| | || | || | ||||||||||||||||| ||| || ||||| || Sbjct 1206707 CTGGAATTCTAGATATCT--CTCTGATGGCTTTGCCTCCATGCCATGCCCTGTGCCAGTT 1206650 Query 20436 TTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACT 20495 || ||| | | ||||||||| || || | || || | || | ||||||||||| Sbjct 1206649 CTATGTTCAGAGTGGTGAATTGTCTTGCCAGCTCTACCAGAGGTCTGGAGATATGGGACT 1206590 Query 20496 GGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTAC 20555 ||| || |||||||| ||||| || ||| | ||||| || || |||||||| ||||| || Sbjct 1206589 GGGAGTGCCTTTCAACATTGCCAGCTATTCACTGCTCACATACATGATTGCCCATGTCAC 1206530 Query 20556 AG 20557 || Sbjct 1206529 AG 1206528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399031947571030