Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq535 89.7 1e-12 >seq535 Length=245707 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| ||||| | |||||||| || || |||||||| ||||| ||| | || Sbjct 88448 CAGCACATGCTGATGAGGGTGGCTGTGGGAATCCACAAGGAGGACATCGAGGCAGCCATC 88507 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 ||||| |||| | || || |||||| | || || ||| | || |||||||||||| Sbjct 88508 GAGACCTACAACCTGCTGTCGGAGCGCTGGTTCACCCACGCCTCCCCCACGCTCTTCAAC 88567 Query 249013 GCCGGTACC 249021 ||||| ||| Sbjct 88568 GCCGGCACC 88576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073336418969472