Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq535 125 6e-24 seq31254 98.7 9e-16 seq3246 82.4 7e-11 >seq535 Length=245707 Score = 125 bits (138), Expect = 6e-24 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| |||||| |||||||| ||||| || || || || ||||| ||||| || || Sbjct 94350 CACCTCCTCTTTGCTGGTGTACTCCACAATCTCAGTGCAGAGGTTGCTGCACTTGATGGT 94291 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| || ||||||||| || | ||||| || ||||||||||||||||| || || Sbjct 94290 GCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGT 94231 Query 23167 GCCCGTCTCGACCTGCGACTCGATGAT 23193 ||| ||||| ||| ||||||||||| Sbjct 94230 GCCAGTCTCTGTCTGGGACTCGATGAT 94204 >seq31254 Length=8300616 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||||||||| || |||||| | || || || || Sbjct 739153 AAAATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTAGAGCCC 739212 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | ||||| | || |||||||||||| | || |||||| Sbjct 739213 AGTGACACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCCGAC 739272 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 || ||| | || || || |||||||| ||| ||||||| | | | || || || || Sbjct 739273 CAACAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACCCTGTCTGACTA 739331 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || || || || || | |||||||| || Sbjct 739332 CAACATCCAGAAGGAATCCACCCTGCAACTTGTCCTGCGCCTGAGGGGTGG 739382 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||||||||| || |||||| | || || || || Sbjct 739383 CATGCAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTAGAGCCCAG 739442 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || |||||||||||| | || |||||||| Sbjct 739443 TGACACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCCGACCA 739502 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| | || || || |||||||| ||| ||||||| | | | || || || || | Sbjct 739503 ACAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACCCTGTCTGACTACA 739561 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || || || || || || || || ||| | |||||||| || Sbjct 739562 ACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTTCGCCTGAGGGGTGG 739610 >seq3246 Length=3797831 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 817483 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 817424 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | || || | || ||||||||||||| | || || || Sbjct 817423 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAT 817364 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || |||||||| ||| ||||||| | || | || || Sbjct 817363 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTAC 817304 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || ||||| || || || || | || ||||| || Sbjct 817303 AACATCCAGAAGGAGTCCACTCTCCACCTTGTCCTGCGTCTCAGGGGTGG 817254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445592250211680