Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3623 89.7 7e-13 >seq3623 Length=623248 Score = 89.7 bits (98), Expect = 7e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| || ||| || | |||| | || | ||| | |||||||| ||||||| || Sbjct 595733 TATTTTTTGTTAAATGCCTCCAGTAAATGCAGCAGGTATAAGAACAGGTTGATGAAGTCG 595674 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || || ||||| || | | || || | || Sbjct 595673 AAGTAGAGATTGATGGCAGCAATTATGTACTCCTCAGGGGACAACCGGTGCATCAACAAG 595614 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || ||||| || |||||||| || ||||| | ||| || || ||||| | |||||| Sbjct 595613 TGAGTGTCGTAAATAATGAACCCACAGAAGAGAAGAGCTCCGGCAGCAGCAAACACCAGC 595554 Query 9408 TCCACTGTTTCA 9419 |||||||| ||| Sbjct 595553 TCCACTGTCTCA 595542 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 ||| |||| ||| | ||||| ||||||||||| || | ||||| |||||||| ||||| Sbjct 593391 CCTCCTCCCAGTCTGCTGAAGTCTCTCTTTGACTGCAAGGTATAGGCAGTCAGTCCAAGA 593332 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAA 9592 || || |||||||| || || || ||||||| || | || ||||||||| Sbjct 593331 AATACAGCAGTAGTAAGGATAAAGGCTTGCAGGACAATGGCCAAATCATAGAA 593279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657915668341360