Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq535 86.0 9e-12 seq1619 84.2 3e-11 >seq535 Length=245707 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 97208 AGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACG 97267 ||||||||| || || ||||| ||||||||||| || || | || |||||||| | Sbjct 94221 AGAGACTGGCACCCCCTACATGCTCTACAAGGACTCCTGCAACAGGAAGAGCAACCAGCA 94280 Query 97268 CCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 || |||||||||||||| || ||| || ||||| || ||||| |||||| || Sbjct 94281 GAACCTGGGCACCATCAAGTGCAGCAACCTCTGCACTGAGATTGTGGAGTACACC 94335 >seq1619 Length=3721367 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| |||| || || || || || || ||||||||||| |||||| ||||| || Sbjct 1314594 GAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTCTCGGGTTCCTTTGCTGCT 1314535 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||||||||| |||||| | || | ||||| |||||||| Sbjct 1314534 ATCTTTTGGCTGAAGAAGAGAGGCTTGATGCCTGGACTGAC 1314494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740769686697040