Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1619 93.3 4e-14 >seq1619 Length=3721367 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||| || || || || || || || || || || || ||||| | |||| || || Sbjct 1314464 TCATCCCTGCTAATAAGTTCATTGGAGAAGGTCAGTCCAGGCATCAAGCCTCTCTTCTTC 1314523 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| ||||||||||| |||||||| || || || ||||||||||| ||||| || Sbjct 1314524 AGCCAAAAGATAGCAGCAAAGGAACCCGAGAAGAAGATGCCTTCAACTGCAGCAAAGGCA 1314583 Query 13295 ATCAACCTTTCACC 13308 | || || ||||| Sbjct 1314584 ACCACTCTCTCACC 1314597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430818235302108