Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4511 163 7e-35 seq31254 150 4e-31 seq1619 113 1e-19 seq2862 89.7 1e-12 >seq4511 Length=1110828 Score = 163 bits (180), Expect = 7e-35 Identities = 134/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | |||||| | ||||||||| Sbjct 433383 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACTGTATTCTTCATC 433442 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | |||||||| || ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 433443 CTGAGGAAGAAATTCAACCAAATCAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 433502 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 433503 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 433545 >seq31254 Length=8300616 Score = 150 bits (166), Expect = 4e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || ||||| ||||| || || |||||| Sbjct 739385 ATGCCACCCCTCAGGCGCAGGACAAGTTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 739326 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || ||||||||||| || || Sbjct 739325 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCGGGG 739266 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| || || ||||| |||| ||| || || || ||| Sbjct 739265 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTGGGCTCT 739206 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| || || || || || || || ||||||||||| Sbjct 739205 ACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 739153 Score = 143 bits (158), Expect = 6e-29 Identities = 168/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| || | ||| || || || | || || || ||||| || || |||||||| | Sbjct 739607 CCCCTC--AGGCGAAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACA 739550 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 | || | || ||||| || || || |||||||| || ||||||||||| || || || | Sbjct 739549 GGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCGGGGGGGA 739490 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513 | ||||| || || || ||||| || || ||||| |||| ||| || || || ||||||| Sbjct 739489 TGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTGGGCTCTACCT 739430 Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || || ||||| || || | || || ||||| |||||||| Sbjct 739429 CCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 739384 >seq1619 Length=3721367 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||| ||||| || ||||| |||||||||||| Sbjct 1314585 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTCTCGGGTTCCTTTGCTGCTATCTTTTGG 1314526 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| |||||| | ||||| ||| | || ||||| || ||| | || |||||||| Sbjct 1314525 CTGAAGAAGAGAGGCTTGATGCCTGGACTGACCTTCTCCAATGAACTTATTAGCAGGGAT 1314466 Query 269258 GA 269259 || Sbjct 1314465 GA 1314464 >seq2862 Length=2185873 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| ||||| |||||||||||||| || | || |||||||| || || |||||||||| Sbjct 294420 CTTTTTGAATGTTATAGTCAGATAGGGTACGTCCATCTTCTAGCTGCTTGCCAGCAAAAA 294479 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | || | ||| ||||||||||| || ||| Sbjct 294480 TCAGTCGCTGCTGATCAGGAGGAATGCCT 294508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150937331865832