Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq699 172 8e-38 seq4520 98.7 1e-15 >seq699 Length=361097 Score = 172 bits (190), Expect = 8e-38 Identities = 219/299 (73%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| || ||||||||| |||| || ||| | | ||| Sbjct 320246 GGAAGGCAGTGAAAGGACAGCCCTTGACGTTGTGGCAGATCAGCTTCTGCAGGGAGGCAG 320187 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||||| |||| |||| ||||| | || || |||||||| || |||||||| |||||| Sbjct 320186 TCTTGATGATCTCAAAGCCCACTTTGCCCCCAAAGGTGCTAGGCTTCCAGTACTCCGGGG 320127 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | ||||| |||| |||| || ||||| ||||| || || || || | ||| | ||| Sbjct 320126 AACAGATAGCGTTGCCCATCAGTCCTTTCAGGGAGAAGGGTGCGCCAAACTCCACCATGG 320067 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCC 8917 | ||||| |||||||| || || |||||||| || ||||| || | ||||| |||| Sbjct 320066 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTAC-AAGAAGGCCTGGGTACAGCTCC 320008 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 | ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 320007 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGT 319949 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| | || || || || || | || ||| ||| || |||||||| ||||||| Sbjct 317863 ATGAGCCTGGTAGTTTGGAAGAGCCGCTCATCATCCCACTCAGGATGTTCCTGTTTCAGG 317804 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || |||| |||||||||||| ||||| || |||||||||||||| | || ||| Sbjct 317803 ATGTCACAGACTCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGC 317744 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| |||||| | || || ||||||| | ||| || || ||||| | ||||| Sbjct 317743 ACCAAGCCAAACACTTCCTGGCCGACAGAAAACTGCAAGTTCTCAGGCACATGAGGAGGG 317684 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || |||||||||||||| ||||| ||| Sbjct 317683 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCACCATCAATCATC 317624 Query 9862 TG 9863 || Sbjct 317623 TG 317622 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | ||| ||||| || || | || || || || | |||| ||| Sbjct 315841 ACCTTTAACTCCCATAGGTGTTGGGCAGTCAAGTCCCACTGGTGGAAGGCTTCTTGTGTA 315782 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||| ||||||||| |||||||||||||| ||| | || || |||||| | || Sbjct 315781 ATAGGAAAGATTGGAGTAAGCTTCCCAGCTTTTGTAATTATAATCACTGTTGTAAGTTGG 315722 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAAG 10449 ||||||||||||| | ||||| ||| | ||| |||| Sbjct 315721 TGGGCTGTCAATCAGGTGTGATCTTGCTGCAAAAGAGAAAG 315681 >seq4520 Length=4621051 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| || || || |||||||||||||| | |||| Sbjct 2571733 TCTTAACTATCTCAAAACCAGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 2571674 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||| ||||| || | ||| | |||| Sbjct 2571673 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAAGGGAGCTCCAATCTCCACCATGC 2571614 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| |||| || || | | || || | || ||||||| Sbjct 2571613 TTTCCCCAAAAATACCATTGGGTTGGGGTTTCTCAAGTAGCAAGCCTGGATAAAACTCCA 2571554 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 2571553 GAGCATCAATGTCTCCATACAG 2571532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708247997073760