Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1784 187 4e-43 seq4861 125 1e-24 >seq1784 Length=1209555 Score = 187 bits (206), Expect = 4e-43 Identities = 202/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | | || || || |||||||| || ||||| ||||| || || Sbjct 1170223 CGCTAAGCGTCACCGCAAAGCGCTGCGCGACAACATCCAGGGCATCACGAAGCCCGCCAT 1170282 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||||||| || || || ||||||||| | ||||| | |||| ||||||| Sbjct 1170283 CCGTCGCCTGGCTCGGCGCGGCGGTGTCAAGCGTATTTCTGGCCTCATCTACGAAGAGAC 1170342 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| ||||||| ||| ||| |||| ||||||| | ||| ||||| Sbjct 1170343 TCGCGGAGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGTGATGCTGTGACCTACACCGA 1170402 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||||||| | || || || || Sbjct 1170403 GCACGCCAAGAGAAAGACGGTGACGGCCATGGACGTGGTCTATGCACTCAAGCGCCAGGG 1170462 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || ||||| ||||| Sbjct 1170463 ACGTACCCTGTACGGCTTTGGCGGTTAA 1170490 Score = 181 bits (200), Expect = 2e-41 Identities = 187/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | | || || || |||||||| || ||||| ||||| || || Sbjct 1157075 CGCTAAGCGTCACCGCAAAGCGCTGCGCGACAACATCCAGGGCATCACGAAGCCCGCCAT 1157134 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||||||| || || || ||||||||| | ||||| | |||| ||||||| Sbjct 1157135 CCGTCGCCTGGCTCGGCGCGGCGGTGTCAAGCGTATTTCTGGCCTCATCTACGAAGAGAC 1157194 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| ||||||| ||| ||| |||| ||||||| | ||| ||||| Sbjct 1157195 TCGCGGAGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGTGATGCTGTGACCTACACCGA 1157254 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||||||| | || || || || Sbjct 1157255 GCACGCCAAGAGAAAGACGGTGACGGCCATGGACGTGGTCTATGCACTCAAGCGCCAGGG 1157314 Query 16672 CCGTA 16676 |||| Sbjct 1157315 ACGTA 1157319 Score = 174 bits (192), Expect = 2e-39 Identities = 195/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || |||||||| ||||| || Sbjct 1110626 CGCTAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAACCAGCCAT 1110685 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| || |||||||| | ||||| || |||||||||| | Sbjct 1110686 CCGTCGTCTGGCTCGCCGTGGCGGCGTCAAGCGCATTTCTGGTCTGATCTATGAAGAAAC 1110745 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| ||||||| ||| ||| |||| |||||| | ||| ||||| Sbjct 1110746 GCGCGGTGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGAGATGCTGTTACCTACACCGA 1110805 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| || |||||||| | ||||| || | || || || || Sbjct 1110806 GCACGCCAAGAGAAAGACTGTGACGGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 1110865 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 1110866 ACGCACCCTCTACGGTTTCGG 1110886 Score = 168 bits (186), Expect = 1e-37 Identities = 194/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || |||||||| ||||| || Sbjct 1114799 CGCTAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAACCAGCCAT 1114740 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| || |||||||| | ||||| || |||||||||| | Sbjct 1114739 CCGCCGTCTGGCTCGCCGTGGCGGCGTCAAGCGCATTTCTGGTCTGATCTATGAAGAAAC 1114680 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| ||||||| ||| ||| |||| |||||| | ||| ||||| Sbjct 1114679 GCGCGGTGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGAGATGCTGTTACCTACACCGA 1114620 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| || |||||||| | ||||| || | || || || || Sbjct 1114619 GCACGCCAAGAGAAAGACTGTGACGGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 1114560 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 1114559 ACGCACCCTCTACGGTTTCGG 1114539 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| || ||||||||||| || || Sbjct 1162908 CGCCAAGCGCCACCGTAAAGTGCTGCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 1162849 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||||||| || || || ||||||||| | ||||| | |||| ||||||| Sbjct 1162848 CCGTCGCCTGGCTCGGCGCGGCGGTGTCAAGCGTATTTCTGGCCTCATCTACGAAGAGAC 1162789 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | | ||||| ||||||| ||| ||| |||| |||||| || || || || Sbjct 1162788 CCGCGGAGGGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGATGCTGTCACTTACACTGA 1162729 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||| | |||||||| || | ||||| | ||||||||| | || || || || Sbjct 1162728 GCACGCCAAAAGGAAGACTGTGACAGCTATGGACGTGGTCTATGCACTCAAGCGCCAGGG 1162669 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || || ||||| Sbjct 1162668 ACGTACCCTGTACGGCTTCGGCGGTTAA 1162641 Score = 145 bits (160), Expect = 1e-30 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 16475 ATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA 16534 |||||||||||||| ||||| || |||||||| || || || ||||||||| | ||||| Sbjct 1176560 ATCACCAAGCCAGCCATCCGCCGCCTGGCTCGGCGCGGCGGTGTCAAGCGTATTTCTGGC 1176501 Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 | |||| ||||||| ||| | || |||| | || || ||| ||| |||| |||| Sbjct 1176500 CTCATCTACGAAGAGACTCGCGGAGTGCTGAAAGTGTTTCTAGAGAACGTGATCCGTGAT 1176441 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 ||| | ||| ||||||||||| || | ||||| || || ||||||| | |||||| Sbjct 1176440 GCTGTGACCTACACCGAGCACGCCAAGAGAAAGACGGTGACGGCCATGGACGTGGTCTAT 1176381 Query 16655 GCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | || || || || |||| | ||||| ||||| ||||| Sbjct 1176380 GCACTCAAGCGCCAGGGGCGTACCCTGTATGGCTTTGGCGGTTAA 1176336 >seq4861 Length=1307344 Score = 125 bits (138), Expect = 1e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 16461 ATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCA 16520 |||||||||| || ||||||||||| || ||||| || ||||||| || ||||| || Sbjct 131873 ATAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCTCAGCGCGGTGGCAGCA 131814 Query 16521 AGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 ||||| ||||||| | |||| |||||| || | ||| ||||| ||||||| ||| Sbjct 131813 AGCGTATCTCTGGCCTCATCTACAAAGAGAGACGCGGTGTGCTGAAGGTCTTCCTGGAGA 131754 Query 16581 CCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCA 16640 ||| |||| ||||||| || ||| | |||||||| || | ||| | || || | | Sbjct 131753 ACGTGATCCGTGATGCTATCACCTACAGTGAGCACGCCAAGAGAAAGGCCGTGACGGCTA 131694 Query 16641 TGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| || | || || || || || Sbjct 131693 CAGATGTCGTCTACGCGCTTAAGCGCCAGGGACG 131660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79046624249022