Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3492 86.0 2e-11 >seq3492 Length=1229997 Score = 86.0 bits (94), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 111389 TACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACG 111448 ||||||||| || || || | || ||| || || |||||||||| |||||||| || Sbjct 1209919 TACAAATGCTAAAGAGCTCTCTGCCAAAGGAGTGAAGATTTGGGATGCTAATGGATCCCG 1209860 Query 111449 TGACTTTCTAGATT--CAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTT 111506 ||| || || ||| ||| ||| | | || || || || ||| | ||||||||| Sbjct 1209859 TGAGTTCCTGGATAAGCAG--GGTTTCAGCACCAGAGAGGAGGGGGATTTGGGACCAGTT 1209802 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 || || || || ||| | |||||||| ||||| |||||| |||||| Sbjct 1209801 TATGGTTTCCAGTGGAGGCACTTTGGAGCAGAATACAAAGATATGCAC 1209754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302831682640628