Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq31254 100 3e-16 seq535 100 3e-16 seq3246 91.5 1e-13 >seq31254 Length=8300616 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||||| || | || | ||| || ||||| || |||||||| || Sbjct 739383 GCCACCCCTCAGGCGCAGGACAAGTTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 739324 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | ||| ||||| || || Sbjct 739323 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCGGGGGG 739264 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||||| | ||| | || || ||| ||| | Sbjct 739263 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTGGGCTCTAC 739204 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 739203 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 739156 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || || || || | || | ||| |||||||| || |||||||| || Sbjct 739611 GCCACCCCTCAGGCGAAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 739552 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | ||| ||||| || || Sbjct 739551 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCGGGGGG 739492 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||||| | ||| | || || ||| ||| | Sbjct 739491 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTGGGCTCTAC 739432 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || | || || || || ||||||||| Sbjct 739431 CTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCATG 739383 >seq535 Length=245707 Score = 100 bits (110), Expect = 3e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | || ||||| | ||| | ||||| || |||||||| ||||| || ||||| | Sbjct 94333 TGTACTCCACAATCTCAGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 94274 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || ||||||||||| | |||||||||||||||||| || ||||||||| ||| | Sbjct 94273 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCTGTCTGGG 94214 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 94213 ACTCGATGAT 94204 >seq3246 Length=3797831 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | | ||||| || | || | || |||||||| || |||||||| ||| Sbjct 816796 AGCCACCCCTGAGGCGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 816855 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | |||||| ||||| ||||||||||| || |||| | | |||||| || || | Sbjct 816856 AAAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGG 816915 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 816916 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCA 816975 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 816976 CCTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 817025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | |||||| || | || | || |||||||| || |||||||| || Sbjct 817253 GCCACCCCTGAGACGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 817312 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 817313 GAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGG 817372 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 817373 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 817432 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 817433 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 817481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471828396399360