Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq31254 96.9 3e-15 seq3246 95.1 1e-14 >seq31254 Length=8300616 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 12/212 (6%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC----TCCAA 16788 ||||| ||||| ||||| || ||||||||||| | || ||| |||||| |||| Sbjct 739358 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT----GCGTCCATCTTCCAG 739303 Query 16789 TTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCA 16846 || ||||| ||| | || |||| ||||||||| || | ||| || ||||| || Sbjct 739302 CTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCGGGGGGGATGCCTTCCTTGTCTTGGAT 739243 Query 16847 ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTT 16906 || || ||| || | | | ||||| | |||||| |||| ||||||||| || Sbjct 739242 CTTGGC--CTTGACATTCTCTATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTG 739185 Query 16907 CCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || ||||| || || || || ||||||||||| Sbjct 739184 CCTGTCAGGGTCTTCACGAAGATCTGCATTTT 739153 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/209 (71%), Gaps = 12/209 (6%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC----TCCAA 16788 ||||| ||||||||||| || ||||||||||| | || ||| |||||| |||| Sbjct 739586 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT----GCGTCCATCTTCCAG 739531 Query 16789 TTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCA 16846 || ||||| ||| | || |||| ||||||||| || | ||| || ||||| || Sbjct 739530 CTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCGGGGGGGATGCCTTCCTTGTCTTGGAT 739471 Query 16847 ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTT 16906 || || ||| || | | | ||||| | |||||| |||| ||||||||| || Sbjct 739470 CTTGGC--CTTGACATTCTCTATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTG 739413 Query 16907 CCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || |||| || || ||||| |||||||| Sbjct 739412 CCTGTCAAGGTCTTCACAAAGATCTGCAT 739384 >seq3246 Length=3797831 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||||| | ||| | ||||||| || Sbjct 816822 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCCAGCTGC 816881 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| || || || | ||| || ||||| || || Sbjct 816882 TTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 816941 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | ||||| | ||||||| |||| ||||||||| || || | Sbjct 816942 GC--CTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTG 816999 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || ||||| |||||||| Sbjct 817000 TGAGGGTCTTCACAAAGATCTGCAT 817024 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||| | | ||| | || |||| || Sbjct 817278 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCTTCCAGCTGC 817337 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| || || || | ||| || ||||| || || Sbjct 817338 TTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 817397 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | ||||| | ||||||| |||| ||||||||| || || | Sbjct 817398 GC--CTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAG 817455 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| || || ||||| |||||||| ||| Sbjct 817456 TCAGGGTCTTCACAAAGATCTGCATGTTG 817484 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | || || ||||||||||| || ||||||||||| | Sbjct 817026 CCCCCTCTCAGACGCAGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 817085 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| ||| | || |||| ||| || || || Sbjct 817086 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 817145 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || |||||| | | | ||||| | ||||||| Sbjct 817146 ATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACATTTTCAATGGTGTCACTGGGCTCCA 817203 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || ||||| || || ||||| |||||||| Sbjct 817204 CCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 817252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404933698689460