Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2406 118 7e-22 seq1264 98.7 7e-16 seq4140 86.0 4e-12 seq3246 82.4 5e-11 >seq2406 Length=228393 Score = 118 bits (130), Expect = 7e-22 Identities = 80/90 (89%), Gaps = 5/90 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 174912 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 174853 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGAT 25986 | |||| ||||||||||||||||||||||| Sbjct 174852 TCATCCATTCATGCGCGTCACTAATTAGAT 174823 >seq1264 Length=356685 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||| Sbjct 269015 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAGTACTTGTTGGCTATTGGTCTCCT 268956 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 268955 GCTGGTATTTAGCCTTA 268939 >seq4140 Length=181117 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || |||| || | |||||| |||| | Sbjct 165761 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACTGTACATGCTGGCTATCAGTCTTGT 165702 Query 20007 GGTAATATTTAGCCTTA 20023 | | ||||||| |||| Sbjct 165701 GCCAGTATTTAGACTTA 165685 >seq3246 Length=3797831 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | ||||| || | || |||||| |||||| || || ||||| ||||| Sbjct 817254 CCACCCCTGAGACGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 817313 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || | || ||||| | ||| Sbjct 817314 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 817373 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || || ||||||||||| | || || | || || Sbjct 817374 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 817433 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || |||| ||| ||||| || ||||||||||| Sbjct 817434 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 817483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334819615890074