Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq31254 174 3e-38 seq3246 159 6e-34 seq3136 84.2 4e-11 seq2132 84.2 4e-11 >seq31254 Length=8300616 Score = 174 bits (192), Expect = 3e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || ||||| || || |||||||| || || || || || | Sbjct 739373 AGGCGCAGGACAAGTTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGT 739314 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || ||||||||||| || ||||||||| Sbjct 739313 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCGGGGGGGATGCCTTCC 739254 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| |||||||| ||| |||||||| | ||||| |||| |||| Sbjct 739253 TTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTGGGCTCTACCTCCAGGGTG 739194 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||||| ||||| ||||||||| Sbjct 739193 ATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATT 739155 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | || | ||| || |||||||| || |||||||| || || || || || | Sbjct 739601 AGGCGAAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGT 739542 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || ||||||||||| || ||||||||| Sbjct 739541 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCGGGGGGGATGCCTTCC 739482 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| |||||||| ||| |||||||| | ||||| |||| |||| Sbjct 739481 TTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTGGGCTCTACCTCCAGGGTG 739422 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || | |||||| || || |||||||| Sbjct 739421 ATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 739384 >seq3246 Length=3797831 Score = 159 bits (176), Expect = 6e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | ||| || |||||||| || |||||||| || ||||| || || | Sbjct 816807 AGGCGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGA 816866 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| || || || || || || || || || || |||||||||||| Sbjct 816867 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 816926 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || ||| |||||||| | || || |||| |||| Sbjct 816927 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 816986 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| || || |||||||| Sbjct 816987 ATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 817024 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || || ||||| || | Sbjct 817263 AGACGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGA 817322 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 817323 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 817382 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || ||| |||||||| | || || |||| |||| Sbjct 817383 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 817442 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 817443 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 817480 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || || ||||| || | Sbjct 817035 AGACGCAGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGA 817094 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 817095 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 817154 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || || |||||||| | || || |||| ||| Sbjct 817155 TTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTG 817214 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 817215 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 817252 >seq3136 Length=13350 Score = 84.2 bits (92), Expect = 4e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 || |||||| |||||||||||| ||||| || ||||||| || ||||||||||||| Sbjct 11116 AGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 11175 Query 84513 AGCCCCACATCGGGCAGGTCGGCAGACTTT 84542 |||||||| | |||||| | |||| |||| Sbjct 11176 AGCCCCACGTTGGGCAG--CTGCAGCCTTT 11203 >seq2132 Length=409716 Score = 84.2 bits (92), Expect = 4e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| || ||| | ||||||||||| || | ||| |||||||||| ||||||||| Sbjct 91613 CATCACCCCCATCCTCTGGTACTCCCCCACTCTCTTCTCAAAGAAGTTGGTCTTGCCCTC 91554 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGC 10033 ||||| ||| ||||||||||||||| |||||||| || Sbjct 91553 CAGGGAGATGTTCTCCATGAAGTCAAAAGGGTTCTCTGC 91515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921262345168880