Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq535 140 6e-28 seq1619 111 3e-19 seq2132 107 4e-18 >seq535 Length=245707 Score = 140 bits (154), Expect = 6e-28 Identities = 136/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 ||||||||| | ||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 94350 CACCTCCTCTTTGCTGGTGTACTCCACAATCTCAGTGCAGAGGTTGCTGCACTTGATGGT 94291 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 |||||||| ||| || ||| ||| |||||||| |||||||||||||||| |||| Sbjct 94290 GCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGT 94231 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 || ||||| ||||| ||| || | || |||||| | | |||||| ||| Sbjct 94230 GCCAGTCTCTGTCTGGGACTCGATGATGGAGTACCAGAGCTGCTGAGCCTTCACC 94176 Score = 132 bits (146), Expect = 9e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| |||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct 91950 ACTCTCTTCATGAAGAGGTCTGGGATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCTTTGC 91891 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| |||||||||||| |||| || | || ||||||| ||| | |||||| ||| Sbjct 91890 TCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGGAACTCAAAGATGTCCAAGTGCCAAGGC 91831 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 |||| ||||| || | ||| || |||| || Sbjct 91830 TCCAGGTAGATGGCAAAGGCTCCAGGCCTCT 91800 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA 244381 || |||||||| || ||| | ||||||| |||||| || | || ||| || | | Sbjct 96751 CCTTTGCTGACTGGAGAGCCTTGGTAGGTCTCGTAGGGTCCCTGCTCCTTGGCAAGTTCA 96692 Query 244382 CAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG 244441 ||||| | || || || | ||||| |||||||| |||||| || ||| | | || Sbjct 96691 CAGCTGGCTTCCAGAGCTCCATAGTAAATGGTCTCAAAGATCTGCTGGTTGAGGAGCTGG 96632 Query 244442 GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACG 244501 |||| || ||||||| | ||||| |||||| | || ||||| || |||||| Sbjct 96631 GCCTCAGGGCTCTCAAAGGGGAACCTCATCAGGATGAAGGCATCTGCCAGGCCTTGCACG 96572 Query 244502 CCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 |||||||||||||| | ||| ||| ||||||||| Sbjct 96571 CCGATGCCGATGGGCCGGTGGCGCCGGTTGGAGCG 96537 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 |||||| ||||| || || || || | ||| ||||| ||||||| || |||||||| Sbjct 98963 CACCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 98904 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | || |||||||||| ||||| |||||| || || |||||||| || | ||| || Sbjct 98903 GGATTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCCGTGGGCATGGGGGAGATCAGGAG 98844 Query 244216 ACTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || | ||| Sbjct 98843 GCTGTTCCTCACCCCATACCT 98823 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 245242 GATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTT 245301 ||||||| ||| || ||| || | ||||| || || ||| | ||||||||| ||| Sbjct 89906 GATGTAGCTGCCGGTGGCCCGGATGCAGCTGACGGCCAGGCCGATGCCGCCGGCGGACTT 89847 Query 245302 GGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCAT 245361 |||||||||||| || ||||| |||||| ||||| || |||||||| |||||| Sbjct 89846 GGAGATGAGGGCACACTGCTTGAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCAT 89787 Query 245362 GTTGAGCAGAAAGCAG 245377 | ||||| |||||| Sbjct 89786 GCACAGCAGGAAGCAG 89771 >seq1619 Length=3721367 Score = 111 bits (122), Expect = 3e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||||||||| |||| || Sbjct 1314597 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTCTCGGGTTCCTTTGCT 1314538 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | ||||| ||||| ||| ||| | | |||||| ||||| |||||||| || ||||| Sbjct 1314537 GCTATCTTTTGGCTGAAGAAGAGAGGCTTGATGCCTGGACTGACCTTCTCCAATGAACTT 1314478 Query 42816 ATCAGCAGGGACGAGG 42831 || |||||||| |||| Sbjct 1314477 ATTAGCAGGGATGAGG 1314462 >seq2132 Length=409716 Score = 107 bits (118), Expect = 4e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || ||||| | || || ||||| ||||||||||| ||| | || ||||||||||||||| Sbjct 89748 GTGGCCTTCGCAGCAGTGGAGGGGATCTTCTTCTCTGGCTCTTTTGCCTCCATCTTCTGG 89807 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| ||| | | |||||| || || |||||||| ||||| || |||||||| || Sbjct 89808 CTGAAGAAGAGAGGGCTGATGCCTGGCCTGACCTTCTCCAACGAGCTGATCAGCAGAGAT 89867 Query 42828 GAGG 42831 |||| Sbjct 89868 GAGG 89871 Score = 91.5 bits (100), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 42474 AGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCC 42533 ||||||| | ||||||||| ||||| ||||||||||||||||||||||| ||| Sbjct 87088 AGGTTCAGCCAGGAGGTGCAGGTGACCGAGGCACGCTGCTTCTACGGCTTCCAGATCGCC 87147 Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCC 42593 || |||||| | ||||| ||| ||||| | ||| || |||| |||||| ||| ||| Sbjct 87148 ATGGAGAACATCCACTCGGAGATGTACAGCCTGCTGATCGACACCTACATCAAGGACCCC 87207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943970270283040