Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq535 111 2e-19 >seq535 Length=245707 Score = 111 bits (122), Expect = 2e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 95105 CCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCT 95164 ||||||||||||||||||||||||| |||||||| ||||||||||| || |||| |||| Sbjct 98854 CCCCCATGCCCACGGCCTCCACGGCTCAGATCCTGGGCAACAACGAATCCATCGAGCCCT 98913 Query 95165 TCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAAC 95220 |||| |||| | |||| | | |||| ||| ||||||| |||| || | |||| Sbjct 98914 ACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGGGAGTTCCAGGTGAGCAAC 98969 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 |||||||||| |||||||||||| || || ||||| |||||| ||||||| | || ||| Sbjct 91179 ACCAATGGCAACTCCAACGGCCTGGTGCCCATGCTGAGGGTCTACAACAACACCGCTCGC 91238 Query 94144 TACGTGGACCAGGGTGG 94160 |||||||||||||| || Sbjct 91239 TACGTGGACCAGGGGGG 91255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494529924013840