Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq31254 84.2 2e-11 >seq31254 Length=8300616 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| || || | | | ||||| | || Sbjct 739358 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGC 739299 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | |||| | |||||||||| || || ||||||||||| || ||| Sbjct 739298 TTGCCAGCAAAGATCAGCCTCTGTTGGTCGGGGGGGATGCCTTCCTTGTCTTGGATCTTG 739239 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | ||||| || || || ||||| || | ||| ||||| || |||||| Sbjct 739238 GCCTTGACATTCTCTATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCTGTC 739179 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || || || || || || ||||| || Sbjct 739178 AGGGTCTTCACGAAGATCTGCATTTT 739153 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 14935 CAGCAACCATGTC---TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTT 14991 ||||||||| || ||||||| | || | | || | || ||||| || || || Sbjct 739628 CAGCAACCAGTTCAGTTGCCACCCCTCAGGCGAAGGACAAGGTGCAGGGTGGACTCCTTC 739569 Query 14992 TGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAA 15051 || |||||||| || || | | | ||||| | || |||||||| | |||| Sbjct 739568 TGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGC 739509 Query 15052 CGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATA 15111 | |||||||||| || || ||||||||||| || ||| || ||| | ||||| Sbjct 739508 CTCTGTTGGTCGGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCTATG 739449 Query 15112 GTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATT 15171 || || || ||||| || | ||| ||||| || ||||||| || || ||||| || Sbjct 739448 GTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATC 739389 Query 15172 TGCAT 15176 ||||| Sbjct 739388 TGCAT 739384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357255866483390