Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq699 145 1e-29 seq4520 102 1e-16 >seq699 Length=361097 Score = 145 bits (160), Expect = 1e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| || | | |||| ||| |||| || || ||||| ||||| || | || ||| Sbjct 317854 GTAGTTTGGAAGAGCCGCTCATCATCCCACTCAGGATGTTCCTGTTTCAGGATGTCACAG 317795 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || | ||||||||| ||||||||||| || ||||||||||| || || ||||| || ||| Sbjct 317794 ACTCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGCACCAAGCCA 317735 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 |||||||| | || || | ||| ||| | || ||||| | || | || | ||| Sbjct 317734 AACACTTCCTGGCCGACAGAAAACTGCAAGTTCTCAGGCACATGAGGAGGGTAGATCATC 317675 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | |||| || || || || || || |||||||||||||| ||||| | ||| Sbjct 317674 TCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCACCATCAATCATCTG 317622 Score = 141 bits (156), Expect = 1e-28 Identities = 209/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| ||||| || ||| || || || ||| | || || | Sbjct 320246 GGAAGGCAGTGAAAGGACAGCCCTTGACGTTGTGGCAGATCAGCTTCTGCAGGGAGGCAG 320187 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | ||| || || || || | || || |||||||| || ||||||||| |||||| Sbjct 320186 TCTTGATGATCTCAAAGCCCACTTTGCCCCCAAAGGTGCTAGGCTTCCAGTACTCCGGGG 320127 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 | ||||| |||| |||| || ||||||| ||| || || || || | ||| | ||| Sbjct 320126 AACAGATAGCGTTGCCCATCAGTCCTTTCAGGGAGAAGGGTGCGCCAAACTCCACCATGG 320067 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || ||||| || | | ||| | ||| || || | Sbjct 320066 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGAAGGCCTGGGTACAGCTCCA 320007 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 320006 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 319951 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 |||||||| |||| |||||| |||| || || |||||||| || || |||||||||||| Sbjct 318947 TCAGGCAAAAGAGGGTGCCAGTGGTACAGAGTGTTGAACTCAGCTGCAATTCGGTTCTGG 318888 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || || || ||| |||||| ||||| || ||||| | || | |||||||| | Sbjct 318887 TATTGGAACCTCTGGT--TGAACAGCAACTCAGGATCAAACTTGAGTTTAAAGTGGTAGC 318830 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || | ||||| ||||| Sbjct 318829 CACTCAAGTGCTGCACATA 318811 >seq4520 Length=4621051 Score = 102 bits (112), Expect = 1e-16 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 ||| || || || || || ||||| | || || || || ||||||||||||||| | Sbjct 2571738 TGCTGTCTTAACTATCTCAAAACCAGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTC 2571679 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 |||||||||||| ||| | | ||||| |||| |||||| ||||| || | ||| | Sbjct 2571678 TGGGGAGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAAGGGAGCTCCAATCTCCAC 2571619 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||||| || || || || || ||| | ||||| || | | ||||| | || | Sbjct 2571618 CATGCTTTCCCCAAAAATACCATTGGGTTGGGGTTTCTCAAGTAGCAAGCCTGGATAAAA 2571559 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | ||| || | ||| ||||| || |||||| ||| || || |||| | ||| || Sbjct 2571558 CTCCAGAGCATCAATGTCTCCATACAGCTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCC 2571499 Query 9175 TACA 9178 | || Sbjct 2571498 TGCA 2571495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723445257563600