Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq18147 95.1 2e-14 seq535 95.1 2e-14 >seq18147 Length=409 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || || | ||||||| | || || | |||||| || || |||| Sbjct 379 CCTGCTTCCAGCCATAGAAGTGCATGCTGGTGAGCTTCCCATAGTTGGGCTCTGCAATGT 320 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | ||||| || |||||||| ||||||||||||| | | | || ||||| || | | Sbjct 319 GGATGTTGAGGGACTGGCTCTGGTCGATGAAAGCTCCTCTGGCAGCTGCCATCTTCAGGA 260 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 |||||||||| || ||||||||||| |||||| Sbjct 259 TGGTCTTCTGGGAGATCTCCCACACTGTCTTG 228 >seq535 Length=245707 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || || | ||||||| | || || | |||||| || || |||| Sbjct 101073 CCTGCTTCCAGCCATAGAAGTGCATGCTGGTGAGCTTCCCATAGTTGGGCTCTGCAATGT 101014 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | ||||| || |||||||| ||||||||||||| | | | || ||||| || | | Sbjct 101013 GGATGTTGAGGGACTGGCTCTGGTCGATGAAAGCTCCTCTGGCAGCTGCCATCTTCAGGA 100954 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 |||||||||| || ||||||||||| |||||| Sbjct 100953 TGGTCTTCTGGGAGATCTCCCACACTGTCTTG 100922 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/127 (76%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 204174 GCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGT 204233 || |||||||| ||| | | ||| || || ||||| || |||| |||||| | | || Sbjct 98979 GCCCCAGGTGG---TTGCTCACCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGT 98923 Query 204234 TGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGG 204293 || ||||| | || |||| | ||||||||||| | |||||||| ||| |||||||| Sbjct 98922 TGCTGGTGTAGGGCTCGATGGATTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCCGTGG 98863 Query 204294 GCATGGG 204300 ||||||| Sbjct 98862 GCATGGG 98856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794844552742240