Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq31254 138 1e-27 seq3246 127 2e-24 seq2132 93.3 4e-14 >seq31254 Length=8300616 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 739153 AAAATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTAGAGCCC 739212 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || || ||| ||||| Sbjct 739213 AGTGACACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCCGAC 739272 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||| |||| || | || ||||| |||||||| || | |||||||| |||||| Sbjct 739273 CAACAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTAC 739332 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| |||||| | || ||||| | || ||||| |||| || ||| Sbjct 739333 AACATCCAGAAGGAATCCACCCTGCAACTTGTCCTGCGCCTGAGGGGTGGC 739383 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||||||| | || || ||| ||| Sbjct 739384 ATGCAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTAGAGCCCAGT 739443 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || || ||| |||||||| Sbjct 739444 GACACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCCGACCAA 739503 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 739504 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 739563 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| | || || || |||| || ||| Sbjct 739564 ATCCAGAAGGAGTCCACCCTGCACCTTGTCCTTCGCCTGAGGGGTGGC 739611 >seq3246 Length=3797831 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| | || || ||| ||| Sbjct 817252 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 817193 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| ||||| || || |||||| | || || Sbjct 817192 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 817133 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 817132 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTACAAC 817073 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || || || | ||||||||| ||||||| ||| Sbjct 817072 ATCCAGAAGGAGTCCACTCTCCACCTTGTGCTGCGTCTGAGAGGGGGC 817025 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||||||| | || || ||| ||| Sbjct 817024 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 816965 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | || || Sbjct 816964 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 816905 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||||| Sbjct 816904 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTTTCCGACTACAAC 816845 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || || || | || ||||| | || || ||| Sbjct 816844 ATCCAGAAGGAGTCCACTCTCCACCTTGTCCTGCGCCTCAGGGGTGGC 816797 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 817483 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 817424 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || |||||| | || Sbjct 817423 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAT 817364 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| || | ||||||||| |||||| Sbjct 817363 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTAC 817304 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | || || || | || |||||| | || || ||| Sbjct 817303 AACATCCAGAAGGAGTCCACTCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 817253 >seq2132 Length=409716 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 |||||||||||| || || | ||||| |||||||| | ||||||||||||||| || Sbjct 87195 GTAGGTGTCGATCAGCAGGCTG--TACATCTCCGAGTGGATGTTCTCCATGGCGATCTGG 87138 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 |||||||| ||||| || |||||| ||||||||| || || ||| | ||| ||| Sbjct 87137 AAGCCGTAGAAGCAGCGTGCCTCGGTCACCTGCACCTCCTGGCTGAACCTCTCCACC 87081 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || |||||||||||||| |||||||| ||||| |||||||| ||||| |||| Sbjct 86459 ACCAGGTTCTCGTTGACGATGCCATCGCTGGCAGCGAAGAAGGCCAGGACGTGGGAGATG 86400 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 |||| ||| | | |||| | |||||||| | ||| ||||| ||||||||| Sbjct 86399 AAATACTTCTCCTCGGGCTTCAGGGCCTCCCAGTGCTGGAGGTCTTTGGAGAGGTCCACC 86340 Query 133399 T 133399 | Sbjct 86339 T 86339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499977394991360