Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq226 109 2e-18 seq4520 87.8 7e-12 >seq226 Length=3542419 Score = 109 bits (120), Expect = 2e-18 Identities = 239/353 (68%), Gaps = 9/353 (3%) Strand=Plus/Minus Query 451259 TCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACT 451318 || ||||| ||||| || ||||| || | || || ||| |||| | | || ||| Sbjct 1161970 TCCATGGTCCTTACCAAGATGAAGGAGATTGCGGAGGCCTAT-TTGGGGCGCAAGGTACA 1161912 Query 451319 GA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGA 451377 || ||| || || || || || ||||| ||||| || | || || || || || ||||| Sbjct 1161911 GAATGCTGTCATCACAGTGCCTGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAAGA 1161852 Query 451378 TGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||| || || ||||| | ||||| | || ||||| ||||| || ||||||||||| Sbjct 1161851 TGCTGGTACCATCACTGGTCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGC 1161792 Query 451438 TCTAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATTTTAGTA 451492 |||| ||||| || ||| || ||| | | ||| ||| || ||| | | | Sbjct 1161791 AATAGCCTATGG-CTTGGACAA-GAAAGGTACCAGGGCAGGAGAGAAGAATGTGCTCATC 1161734 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 ||||| || || || || ||| |||| || | ||| | || || ||||| | ||| Sbjct 1161733 TTTGACTTGGGAGGGGGCACTTTTGATGTGTCCATCCTTACTATCGAGGATGGCATCTTT 1161674 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||| | || |||||| || ||||| || || || || |||| || Sbjct 1161673 GAGGTGAAGTCCACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 1161621 Score = 107 bits (118), Expect = 8e-18 Identities = 340/517 (66%), Gaps = 14/517 (3%) Strand=Plus/Minus Query 451982 AAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTA 452041 |||||| | || |||||||| |||||||||||||||||||| || ||||||||||| || Sbjct 1161244 AAGAGCATCAACCCTGATGAGGCTGTTGCATATGGTGCTGCTGTGCAAGCAGCTATCCTT 1161185 Query 452042 ACAGGTTCAGATGA---TGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTA 452098 | || ||| | ||| || | ||| | ||| | | ||||| || ||||| Sbjct 1161184 ATGGG---AGACAAGTCTGAGAATGTGCAGGATTTGCTGCTGTTGGATGTCACCCCTCTG 1161128 Query 452099 TCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCT 452158 ||| | || | || |||||||||||| |||||||| | | || || || || | Sbjct 1161127 TCTTTGGGCATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCGCAATACCACC 1161068 Query 452159 ATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCA-ACCAGGTGTAAC 452217 ||||| ||| | | ||| || || | || ||| ||||| | || |||| Sbjct 1161067 ATTCCCACCAAACAAACTCAGACCTTCACCACCTACTCTGACAACCAGAGCA-GTGTCCT 1161009 Query 452218 TATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATT 452277 | || |||| ||| || || | || ||||| || || || ||| || |||| Sbjct 1161008 GGTCCAGGTGTATGAGGGTGAGAGGGCCATGACGAAGGACAACAACTTACTGGGCAAATT 1160949 Query 452278 TACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGA 452337 | || || ||| || || || | ||| || || || || | || | ||| Sbjct 1160948 TGACCTAACAGGCATCCCCCCAGCACCCCGTGGAGTCCCCCAGATCGAGGTCACTTTTGA 1160889 Query 452338 TGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA-AAAATCATCTGGAAAATCAG 452396 ||||||| |||||||| || ||||| ||||| || || || | || || || || Sbjct 1160888 CATTGATGCCAATGGTATCCTGAATGTCAGTGCTGTGGACAAGAGCA--CGGGTAAGGAG 1160831 Query 452397 AA-AAAATTACAATTACTAATGATAAAAACCG-TTTATCTAAAGAAGATATTGAAAAAAT 452454 || || || || || || ||||| || ||| ||| | ||||| || || || || Sbjct 1160830 AACAAGATCACCATCACCAATGACAAGGGCCGCCTTAGC-AAAGATGACATCGATCGTAT 1160772 Query 452455 GGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAA 452491 ||| | |||||||| |||| ||| | || |||||| Sbjct 1160771 GGTGCAAGAAGCAGAGAAATACAAAGCAGAGGATGAA 1160735 >seq4520 Length=4621051 Score = 87.8 bits (96), Expect = 7e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| || ||||||| || || || ||||||||||| || || || || || Sbjct 3551422 GTTACTCATGCTGTTGTTACTGTACCAGCCTACTTCAATGATGCTCAGCGCCAGGCTACG 3551363 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| || ||||||||| | ||||| | ||||||||||||| || Sbjct 3551362 AAAGATGCCGGCACTATTGCTGGACTCAATGTAATGAGAATTATTAATGAGCC 3551310 Score = 87.8 bits (96), Expect = 7e-12 Identities = 84/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| || ||| |||| ||||| || | ||||| | || ||||| ||||||||| Sbjct 3551819 AAAGCTAAACCCCATATCCAAGTCGATGTTGGAGGTGGACAGACAAAAACATTTGCTCCT 3551760 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| ||||||| || || |||||||| ||||||||||| Sbjct 3551759 GAAGAAATTTCTGCTATGGTCCTGACAAAAATGAAGGAAACAGCAGA 3551713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974927239619432