Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq226 168 5e-36 seq1442 89.7 4e-12 >seq226 Length=3542419 Score = 168 bits (186), Expect = 5e-36 Identities = 929/1470 (63%), Gaps = 26/1470 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||| | ||||| || |||||||||||||| | ||||| ||||| || || || ||||| Sbjct 1160856 GCACTGACATTCAGGATACCATTGGCATCAATGTCAAAAGTGACCTCGATCTGGGGGACT 1160915 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | || || ||||| ||| | | |||| | ||||| || || || || Sbjct 1160916 CCACGGGGTGCTGGGGGGATGCCTGTTAGGTCAAATTTGCCCAGTAAGTTGTTGTCCTTC 1160975 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 517436 || | | |||||||| | | |||| || | ||| | | || || || || | Sbjct 1160976 GTCATGGCCCTCTCACCCTCATACACCTGGACCAGGACACTGC--TCTGGTTGTCAGAGT 1161033 Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || |||| ||| ||| ||||| || || || | | || | | Sbjct 1161034 AGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTATTGCGCTTGATGAGAGCA 1161092 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||||| ||||| || | || | ||| ||||| |||||||| | || | Sbjct 1161093 GTCATCACTCCACCAGCTGTCTCGATGCCCAAAGACAGAGGGGTGACATCCAACAGCAGC 1161152 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || || | || ||| | | || | ||| ||||||||||| | |||||||||| Sbjct 1161153 AAATCCTGCACATTCTCAGACTTGTCTCCCATAAGGATAGCTGCTTGCACAGCAGCACCA 1161212 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 ||||||||||| |||||||| || | | | || || | ||| |||||||| || | Sbjct 1161213 TATGCAACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 1161272 Query 517676 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735 ||||| | | | ||| || ||||||| || || || || | ||||| || || Sbjct 1161273 TGTAGAAGCTTTTGGATCTTGGGGATACGAGTGGAGCCACCCACCAGCACAATCTCCTGG 1161332 Query 517736 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCT 517795 | ||| || || || || | ||| | | | || || || ||||| || | Sbjct 1161333 ATCTGGCCCTTGTCTAGCTTAGCATCACGCAGAGCCTTCTCCACTGGTTCCAGGGTGCCA 1161392 Query 517796 CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCA 517855 | || | |||| | || || ||||| || | |||| || | | | ||| Sbjct 1161393 CGGAAGAGATCTGCATTGAGCTCCTCGAAGCGGGCACGTGTAATAGAGGTGTAGAAGTCA 1161452 Query 517856 ATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA--AGATAGTGCAC 517913 || || || || | || |||| ||||| ||| ||| || ||||| || |||| | Sbjct 1161453 ATGCCCTCAAAAAGGGAGTCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGAGTG--C 1161510 Query 517914 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAA 517971 | || || | ||||| ||||| | |||| | | || | ||| ||| | | Sbjct 1161511 GCTTTGCTCTCTCACAAGCTGTACGCAGTCGCCTCACTGC--TCGCTTGTTGCCAGCAAT 1161568 Query 517972 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCA 518029 || || | || | ||||| ||||| |||| ||| | || | || || ||| Sbjct 1161569 GTCACGCTTGTGCTTACGTTTGAATTCTTC--CACAAAATGGTTCACCATGCGGTTGTCA 1161626 Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089 || || || || |||| | || | || | || | | || | || | ||||| Sbjct 1161627 AAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATCC 1161686 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 518149 || | || | | | |||||| || || || |||| ||||| || || |||||| Sbjct 1161687 TCGATAGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATTC 1161746 Query 518150 ATTTCT-TTGTCTTGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203 | ||| || | ||| || || || | ||||| || | ||||| || || || Sbjct 1161747 TTCTCTCCTGCCCTGGTACCTTTCTTGTCCAAGCCATAGGCTATTGCAGCTGCTGTGGGC 1161806 Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 ||||| ||||| | || ||||||||||||| || | || |||||||| ||||| || Sbjct 1161807 TCATTGATAATACGCATCACATTAAGACCAGTGATGGTACCAGCATCTTTGGTGGCCTGG 1161866 Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCAGTTACTTCTTTACC 518322 | || || ||||| || || ||||| || || || || ||| || || ||| || Sbjct 1161867 CGCTGGGAGTCGTTGAAGTAAGCAGGCACTGTGATGACAGCATTCTGTACCTTGCGCCCC 1161926 Query 518323 AATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 || ||| || || | | ||||| || | | | ||| || || | ||||| Sbjct 1161927 AA-ATAGGCCTCCGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCTGG 1161985 Query 518383 GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 518442 | | | ||| ||| | || |||| | | ||||| ||| | || Sbjct 1161986 GAAGAAGGTCTTCATCTCACCCTTGTACTCCACTTGCACCTTGGGTTTGCCACCCTCGTT 1162045 Query 518443 AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 518502 | || || ||||||| ||||| || || || || | |||||| | | | | Sbjct 1162046 TACCACACGGAAGGGCCAGTGCTTCATGTCAGACTGCACCGTGGGGTCATCATACTTGCG 1162105 Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 || || | ||||| ||||| || || || ||||| || || || || | || | || Sbjct 1162106 GCCGATGAGGCGTTTGGCATCGAAGATGGTGTTGGTAGGGTTCATAGCCACCTGGTTCTT 1162165 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 ||| |||||||| || || ||||||| || || || | ||||| || || ||||| Sbjct 1162166 GGCAGCATCTCCGATGAGGCGTTCTGTATCGGTGAAGGCGACATAGCTGGGTGTGGTGCG 1162225 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 || || |||||||| || || || || || || |||| || | ||||| ||||| Sbjct 1162226 GTTGCCCTGATCATTGGCGATGATCTCCACCTTGCCATGCTGGAAGACACCCACACAGGA 1162285 Query 518683 AAAAGTTGTTCCTAAATCAATACCAATAGC 518712 | || || || || ||||| || || || Sbjct 1162286 GTATGTGGTGCCCAAGTCAATGCCGATTGC 1162315 >seq1442 Length=2453758 Score = 89.7 bits (98), Expect = 4e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 ||||||||| || || |||||||| |||| ||||| || |||||||||||||| | Sbjct 2132892 CTTTGTCTTCAGACTTGTCCAGACCATAGGCAAGTGCAGCTGCTGTTGGTTCATTAATCA 2132951 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 |||||||||||| | ||||| || || |||||||||||||| || Sbjct 2132952 CTCTCAAAACATTCAAGCCAGCGATCTGCCCAGCATCTTTAGTGGCCTG 2133000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779271473569324