Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3213 82.4 1e-10 >seq3213 Length=239771 Score = 82.4 bits (90), Expect = 1e-10 Identities = 134/188 (71%), Gaps = 5/188 (3%) Strand=Plus/Minus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 ||||||||||| | |||||||| || ||||||||||| || || ||||| | || | Sbjct 30600 AAAACTGTGTTGGTTGGGTTCATTGCGACCTGGTTCTTCGCGGCATCGCCGATCA-ACCT 30542 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGC 8076 | | || || || |||||||| | |||| || || || || || |||||||| || Sbjct 30541 --CTCCGTGTCTGTGAAGGCGACGTA-GCTGGGCGTGGTCCGGTTGCCCTGGTCGTTGGC 30485 Query 8077 AATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATC 8136 ||| ||||| || | | ||| | ||||| ||||| || || || || || | ||| Sbjct 30484 AATGATTTCCACCTTCCCATGTTGGAACACGCCAACGCAGGAGTATGTGGTGCCAAGATC 30425 Query 8137 AATACCGA 8144 ||| |||| Sbjct 30424 AATTCCGA 30417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634884669493360