Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3246 109 4e-19 seq31254 105 4e-18 >seq3246 Length=3797831 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| |||||| | || |||| |||||||| || || ||||| Sbjct 816834 TCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAG 816893 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| ||| | || | || |||||||| ||||| || || || Sbjct 816894 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--AT 816951 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || ||||| ||||||| Sbjct 816952 TCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 817011 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 817012 CAAAGATCTGCAT 817024 Score = 100 bits (110), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 817290 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAG 817349 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| ||| | || | || |||||||| ||||| || || || Sbjct 817350 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--AT 817407 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || || ||||||| Sbjct 817408 TCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 817467 Query 34969 CAAAGATCTGCATATT 34984 ||||||||||||| || Sbjct 817468 CAAAGATCTGCATGTT 817483 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 817062 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAG 817121 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| ||| | || | || |||||||| ||||| || || | Sbjct 817122 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTT 817181 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | || ||||| || || || || ||||||||| Sbjct 817182 TCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACA 817241 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 817242 AAGATCTGCAT 817252 >seq31254 Length=8300616 Score = 105 bits (116), Expect = 4e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | ||| |||| |||||||| || || ||||| Sbjct 739347 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 739288 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | || ||||| | || | || |||||||| ||||| ||||| Sbjct 739287 GATCAGCCTCTGTTGGTCGGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 739228 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 |||| | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 739227 CTCTATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCAC 739168 Query 34970 AAAGATCTGCATATTC 34985 ||||||||||| ||| Sbjct 739167 GAAGATCTGCATTTTC 739152 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | ||| |||| |||||||| || || ||||| Sbjct 739574 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAG 739515 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | || ||||| | || | || |||||||| ||||| ||||| Sbjct 739514 ATCAGCCTCTGTTGGTCGGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTC 739455 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | |||| || ||| || || | ||| ||||| || || || | ||||||||| Sbjct 739454 TCTATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACA 739395 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 739394 AAGATCTGCAT 739384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324509944424112