Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2132 93.3 5e-14 >seq2132 Length=409716 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || |||| || || || || || | ||||||||||| ||||| || | Sbjct 89871 CCTCATCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGCCCTCTCTTCT 89812 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || || ||||| || ||||| ||||| || || || |||||||| || | Sbjct 89811 TCAGCCAGAAGATGGAGGCAAAAGAGCCAGAGAAGAAGATCCCCTCCACTGCTGCGAAGG 89752 Query 19103 CAACTAGTCTTTCTCC 19118 | || | || ||| || Sbjct 89751 CCACAACTCGTTCCCC 89736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561889198144560