Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq226 111 1e-18 >seq226 Length=3542419 Score = 111 bits (122), Expect = 1e-18 Identities = 356/547 (65%), Gaps = 13/547 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || |||||||| ||||| ||||| | || |||| || Sbjct 1162315 GCAATCGGCATTGACTTGGGCACCACATACTCCTGTGTGGGTGTCTTCCAGCATGGCAAG 1162256 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || ||||||||||| || ||| | || || || ||||| | ||||| Sbjct 1162255 GTGGAGATCATCGCCAATGATCAGGGCAACCGCACCACACCCAGCTATGTCGCCTTCACC 1162196 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | | || ||||| || || | || | || || |||||||| Sbjct 1162195 GATACAGAACGCCTCATCGGAGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 1162136 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || || ||||| ||||| | || || | | | | |||| | || || ||| | Sbjct 1162135 ACCATCTTCGATGCCAAACGCCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCT 1162076 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-- 550289 || |||||||| ||||| |||| | || || | ||| ||||| | | ||| Sbjct 1162075 GACATGAAGCACTGGCCCTTCCGTGTGGTAAACGAGGGTGGCAAACCCAAGGTGCAAGTG 1162016 Query 550290 --CTACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | | | || | || | ||||| | || || ||||| Sbjct 1162015 GAGTAC-----AAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCC 1161961 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTAC-GGATGCAGTA 550405 | | || ||||| | | || || | | |||| ||| ||| | |||| || Sbjct 1161960 TTACCAAGATGAAGGAGATTGCGGAGGCCTAT-TTGGGGCGCAAGGTACAGAATGCTGTC 1161902 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || || || || || || || || ||||| || || || || || ||||||||||| Sbjct 1161901 ATCACAGTGCCTGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAAGATGCTGGTACC 1161842 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 || |||| |||||||| | |||||||||||||| || || || |||||| | || ||| Sbjct 1161841 ATCACTGGTCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCAATAGCCTAT 1161782 Query 550526 GGACTTG 550532 || |||| Sbjct 1161781 GG-CTTG 1161776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027643147524460