Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq535 123 5e-23 seq2132 111 3e-19 seq18147 93.3 8e-14 >seq535 Length=245707 Score = 123 bits (136), Expect = 5e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||| ||||| ||||||||||| |||||||||||||||||| ||| Sbjct 94334 GTGTACTCCACAATCTCAGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 94275 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||||||||||| || |||||| |||| Sbjct 94274 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCTGTCTGG 94215 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCC 213693 ||| | | || | |||||| | | ||||| ||||| |||| Sbjct 94214 GACTCGATGATGGAGTACCAGAGCTGCTGAGCCTTCACCACGCGCC 94169 Score = 120 bits (132), Expect = 6e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 ||||||| |||||| ||||| |||| ||| || || ||| |||||||||| || | Sbjct 91950 ACTCTCTTCATGAAGAGGTCTGGGATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCTTTGC 91891 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || ||| |||| ||| || ||| || || || |||||||||||| |||||| ||| Sbjct 91890 TCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGGAACTCAAAGATGTCCAAGTGCCAAGGC 91831 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| ||||||||||||||| || ||||||| Sbjct 91830 TCCAGGTAGATGGCAAAGGCTCCAGGCCTCT 91800 Score = 104 bits (114), Expect = 4e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 |||||||| || || ||| ||||| | |||||| || ||||||||||| || || Sbjct 96751 CCTTTGCTGACTGGAGAGCCTTGGTAGGTCTCGTAGGGTCCCTGCTCCTTGGCAAGTTCA 96692 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| || | ||| || | ||||| ||||| ||||| |||| | |||||| || | Sbjct 96691 CAGCTGGCTTCCAGAGCTCCATAGTAAATGGTCTCAAAGATCTGCTGGTTGAGGAGCTGG 96632 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||| ||| | ||||| | | |||| | ||| |||| ||||| || || || Sbjct 96631 GCCTCAGGGCTCTCAAAGGGGAACCTCATCAGGATGAAGGCATCTGCCAGGCCTTGCACG 96572 Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 |||||||||||||| | ||| | | |||| || Sbjct 96571 CCGATGCCGATGGGCCGGTGGCGCCGGTTGGA 96540 Score = 100 bits (110), Expect = 5e-16 Identities = 113/151 (75%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 212899 CCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTG 212958 ||||||| |||| | |||||| || || ||||| ||||| | ||| | ||| Sbjct 98976 CCAGGTG---GTTGCTCACCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGC 98920 Query 212959 AAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCA 213018 ||||||||||||||| |||||||| ||||| ||||| || ||| ||| ||||||| Sbjct 98919 TGGTGTAGGGCTCGATGGATTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCCGTGGGCA 98860 Query 213019 TGGGAGCCACCAGGAGACTGTTCCTCACTCC 213049 |||| | | |||||| ||||||||||| || Sbjct 98859 TGGGGGAGATCAGGAGGCTGTTCCTCACCCC 98829 Score = 93.3 bits (102), Expect = 8e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA-T 212754 ||| |||||||| |||||||| ||||| | | ||| |||| ||||| | | ||| | Sbjct 101009 GTTGAGGGACTGGCTCTGGTCGATGAAAGCTCCTCTGGCAGCTGCCATCTTCAGGATGGT 100950 Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGG 212814 || ||||||||| ||||||||| |||||| ||| | || |||||||| |||| | | Sbjct 100949 CT-TCTGGGAGATCTCCCACACTGTCTTGTAGAGCTGCTTCAGGTCCTCAGGGATCTCAG 100891 Query 212815 GGATGTTCTG 212824 |||||||||| Sbjct 100890 GGATGTTCTG 100881 >seq2132 Length=409716 Score = 111 bits (122), Expect = 3e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | |||||| ||| ||||||||||| || |||||||| | ||| |||| || Sbjct 89869 TCATCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGCCCTCTCTTCTTC 89810 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || | || |||||||||||||||||||| ||||||||||| ||||| || Sbjct 89809 AGCCAGAAGATGGAGGCAAAAGAGCCAGAGAAGAAGATCCCCTCCACTGCTGCGAAGGC 89751 Score = 96.9 bits (106), Expect = 6e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||||||||||| |||||||||||||| ||||| ||||||| ||||||||||| Sbjct 91598 CTGGTACTCCCCCACTCTCTTCTCAAAGAAGTTGGTCTTGCCCTCCAGGGAGATGTTCTC 91539 Query 47899 CATGAAGAGGAAGGGGTT 47916 ||||||| || ||||| Sbjct 91538 CATGAAGTCAAAAGGGTT 91521 >seq18147 Length=409 Score = 93.3 bits (102), Expect = 8e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA-T 212754 ||| |||||||| |||||||| ||||| | | ||| |||| ||||| | | ||| | Sbjct 315 GTTGAGGGACTGGCTCTGGTCGATGAAAGCTCCTCTGGCAGCTGCCATCTTCAGGATGGT 256 Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGG 212814 || ||||||||| ||||||||| |||||| ||| | || |||||||| |||| | | Sbjct 255 CT-TCTGGGAGATCTCCCACACTGTCTTGTAGAGCTGCTTCAGGTCCTCAGGGATCTCAG 197 Query 212815 GGATGTTCTG 212824 |||||||||| Sbjct 196 GGATGTTCTG 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931168873423360