Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2132 98.7 2e-15 seq535 95.1 2e-14 seq1619 93.3 8e-14 >seq2132 Length=409716 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || ||||| || || |||||||| ||||| ||| || || ||||| ||||||||||| Sbjct 89748 GTGGCCTTCGCAGCAGTGGAGGGGATCTTCTTCTCTGGCTCTTTTGCCTCCATCTTCTGG 89807 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 || ||| ||| ||| ||||| || ||| ||| ||||||||||| |||||||| || Sbjct 89808 CTGAAGAAGAGAGGGCTGATGCCTGGCCTGACCTTCTCCAACGAGCTGATCAGCAGAGAT 89867 Query 26005 GAGG 26008 |||| Sbjct 89868 GAGG 89871 >seq535 Length=245707 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || |||| |||||||||||| |||||||| || || ||||| || Sbjct 91963 CTGGTTGCTTTCAACTCTCTTCATGAAGAGGTCTGGGATCCAGAGGGCAAAGAAGAGGTC 91904 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 |||| | ||||||||| || |||| ||| |||| || | |||||||| ||||| Sbjct 91903 CCTGGCTCTTTGCTCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGGAACTCAAAGATGTC 91844 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGC 222165 |||||| |||||||| |||| ||| Sbjct 91843 CAAGTGCCAAGGCTCCAGGTAGATGGC 91817 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 221731 CACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGT 221790 |||||| || ||| |||| |||| | ||||| || ||||||||||||||||||||||| Sbjct 94350 CACCTCCTCTTTGCTGGTGTACTCCACAATCTCAGTGCAGAGGTTGCTGCACTTGATGGT 94291 Query 221791 CCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACC 221850 ||||||| | || || ||| | ||| | ||||||||||||||| |||| Sbjct 94290 GCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGT 94231 Query 221851 GCCAGTCTC 221859 ||||||||| Sbjct 94230 GCCAGTCTC 94222 Score = 93.3 bits (102), Expect = 8e-14 Identities = 106/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Minus Query 221106 CCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAG 221165 ||| ||| ||| ||||| ||||| || || ||||| ||||| | ||| | ||| Sbjct 98976 CCAGGTGGTTGCTCACC---TGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGC 98920 Query 221166 AAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCA 221225 ||| | || |||||| ||||||||||||||||||||||||||| ||| ||||||| Sbjct 98919 TGGTGTAGGGCTCGATGGATTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCCGTGGGCA 98860 Query 221226 TGGGTGCCACCAGCAGACTGTT 221247 |||| | | ||| || ||||| Sbjct 98859 TGGGGGAGATCAGGAGGCTGTT 98838 >seq1619 Length=3721367 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| || || |||||||| ||| ||||| ||||| || ||||| | Sbjct 1314587 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTCTCGGGTTCCTTTGCTGCTATCTTTT 1314528 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || ||||| || ||| ||| ||||| || || || ||||||| Sbjct 1314527 GGCTGAAGAAGAGAGGCTTGATGCCTGGACTGACCTTCTCCAATGAACTTATTAGCAGGG 1314468 Query 26003 ACGAGG 26008 | |||| Sbjct 1314467 ATGAGG 1314462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928481923557760