Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq226 134 9e-26 seq3213 98.7 6e-15 seq1442 86.0 4e-11 >seq226 Length=3542419 Score = 134 bits (148), Expect = 9e-26 Identities = 457/703 (65%), Gaps = 12/703 (2%) Strand=Plus/Minus Query 475477 AGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTAC 475536 |||| | || || || | || |||||||| | || ||||| |||| ||| | || Sbjct 1161551 AGCAGTGAGGCGACTGCGTACAGCTTGTGAGAGAGCAAAGCGCACTCTCAGCTCTTCCAC 1161492 Query 475537 TCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTA 475595 ||| ||| |||| |||| || |||||||| || ||||| || || |||| |||| Sbjct 1161491 ACAAGCTAGCATTGAGATTGACTCCCTTTTTGAGGGCATTGACTTCTACACCTCT-ATTA 1161433 Query 475596 CAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTG 475655 || | || || || || | | | |||||||| | || | ||||| || | Sbjct 1161432 CACGTGCCCGCTTCGAGGAGCTCAATGCAGATCTCTTCCGTGGCACCCTGGAACCAGTGG 1161373 Query 475656 AACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAG 475715 | | | ||| | ||| |||| || ||||| || |||| || ||||| || || | Sbjct 1161372 AGAAGGCTCTGCGTGATGCTAAGCTAGACAAGGGCCAGATCCAGGAGATTGTGCTGGTGG 1161313 Query 475716 GAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTT--CATCATATTTT-AATGGTA 475772 | || || || | || || || || ||| |||| || | | || ||||| | Sbjct 1161312 GTGGCTCCACTCGTATCCCCAAGATCC---AAAAGCTTCTACAGGACTTCTTCAATGGCA 1161256 Query 475773 AAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAG 475832 || || | || | || | || |||||||| |||||||||||||| |||||||| |||| Sbjct 1161255 AAGAGCTCAACAAGAGCATCAACCCTGATGAGGCTGTTGCATATGGTGCTGCTGTGCAAG 1161196 Query 475833 CAGCTAT-TTTATCAGGTCAATCAGAC-GAGAAACTAAATAATATTGTACTTGTTGACGT 475890 ||||||| |||| || | || | ||||| | | || | | || | || || Sbjct 1161195 CAGCTATCCTTAT--GGGAGACAAGTCTGAGAATGTGCAGGATTTGCTGCTGTTGGATGT 1161138 Query 475891 AACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAG 475950 || || || || || || | || |||| ||| || | |||||| ||| || | | Sbjct 1161137 CACCCCTCTGTCTTTGGGCATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCG 1161078 Query 475951 AAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAAC 476010 ||||| | || || |||| || | | || |||| || ||||| || || | Sbjct 1161077 CAATACCACCATTCCCACCAAACAAACTCAGACCTTCACCACCTACTCTGACAACCAGAG 1161018 Query 476011 AACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACT 476070 | ||| |||| | | ||| ||||| || | || || || || ||| ||| Sbjct 1161017 CAGTGTCCTGGTCCAGGTGTATGAGGGTGAGAGGGCCATGACGAAGGACAACAACTTACT 1160958 Query 476071 TGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGT 476130 || | ||| | || ||| || || || || ||| | ||||| || || || || || Sbjct 1160957 GGGCAAATTTGACCTAACAGGCATCCCCCCAGCACCCCGTGGAGTCCCCCAGATCGAGGT 1160898 Query 476131 TACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 |||||||| |||||||| |||||||| || ||||| | |||| Sbjct 1160897 CACTTTTGACATTGATGCCAATGGTATCCTGAATGTCAGTGCT 1160855 Score = 134 bits (148), Expect = 9e-26 Identities = 363/551 (66%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||||| || ||||| || || || || ||| ||||| | ||| | || |||| || Sbjct 1162315 GCAATCGGCATTGACTTGGGCACCACATACTCCTGTGTGGGTGTCTTCCAGCATGGCAAG 1162256 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || |||||||| || || || | || ||||| ||||| | || || Sbjct 1162255 GTGGAGATCATCGCCAATGATCAGGGCAACCGCACCACACCCAGCTATGTCGCCTTCACC 1162196 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || |||| || || ||||||||||| || | || | || || ||| || Sbjct 1162195 GATACAGAACGCCTCATCGGAGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 1162136 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || || ||||| ||| | | || || || || | |||||| |||| || || ||| Sbjct 1162135 ACCATCTTCGATGCCAAACGCCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCT 1162076 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA--G 474626 || ||| || ||||| || ||| |||| | ||||| ||||| | | || | Sbjct 1162075 GACATGAAGCACTGGCCCTTCCGTGTGGTAAACGAGGGTGGCAAACCCAAGGTGCAAGTG 1162016 Query 474627 CAATACACGCAGGTGAAACTAA-ACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | |||| | ||||| | || || | ||| || || | || || ||||| | Sbjct 1162015 GAGTACAAG--GGTGAGATGAAGACCTTCTTC-CCAGAGGAGATCAGCTCCATGGTCCTT 1161959 Query 474686 GCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 |||| ||||| | | ||| | ||| | || | | ||| |||| || || Sbjct 1161958 ACCAAGATGAAGGAGATTGCGGAGGCCTATTTGGGGCGCAAGGTACAGAATGCTGTCATC 1161899 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || || || || || || || || || || || |||||||| || | || Sbjct 1161898 ACAGTGCCTGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAAGATGCTGGTACCATC 1161839 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 | ||||||||||| | |||||||| ||||| || |||||||| ||| | || ||||| Sbjct 1161838 ACTGGTCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCAATAGCCTATGGC 1161779 Query 474866 CTTGATAAGAA 474876 | || ||||| Sbjct 1161778 TTGGACAAGAA 1161768 >seq3213 Length=239771 Score = 98.7 bits (108), Expect = 6e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 476022 TCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTA 476081 |||| ||| |||||||||| | | ||||| || || ||| || || | ||| Sbjct 34603 TCCAGGTCTATGAAGGTGAACGTGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTG 34662 Query 476082 ATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATA 476141 | || ||||| || |||||||||||||| || ||||| |||||||| || ||||||| Sbjct 34663 AGCTGACTGGTATCCCCCCTGCTCCCAGAGGTGTGCCTCAGATTGAAGTAACCTTTGATA 34722 Query 476142 TTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||||||| ||||| || || ||||| ||||| Sbjct 34723 TTGATGCCAATGGCATCCTCAATGTCTCTGCT 34754 >seq1442 Length=2453758 Score = 86.0 bits (94), Expect = 4e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 474778 TCAAGCAACTAAAGATGC-GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836 ||| || ||||||||||| ||| ||| | || || | |||||||| | | ||||||| Sbjct 2133001 TCAGGCCACTAAAGATGCTGGGCAGA-TCGCTGGCTTGAATGTTTTGAGAGTGATTAATG 2132943 Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAG 474887 ||||||||||||| |||||||| |||||||| || ||| | ||||||| Sbjct 2132942 AACCAACAGCAGCTGCACTTGCCTATGGTCTGGACAAGTCTGAAGACAAAG 2132892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266838564295592