Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1787 208 9e-49 seq853 125 8e-24 >seq1787 Length=274390 Score = 208 bits (230), Expect = 9e-49 Identities = 643/991 (65%), Gaps = 9/991 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| |||| || || |||| ||||| || || || ||||||||| ||| || | Sbjct 105216 TGTGCCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACGTCAGTGTCAAACT 105157 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || | ||||| ||| ||||| ||||||| || |||||| || || | Sbjct 105156 TGTTAGCAAAGAAGTGGTG---GTTTTGTAGCATCCAGTTCAGGTCTCCTACGCCAAAAA 105100 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || || |||| || ||||| | || ||||| | || || Sbjct 105099 CACAGACAGAGCGAACATGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACATGT 105040 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | ||||| ||||||||||||| ||||||||||| | || | |||||| || || | Sbjct 105039 CGCCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACATCAT 104980 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| | ||||| ||||| || || | || || | ||| | || ||||||| Sbjct 104979 ACTTGTTACTAGAAGGAACTGCACCTGGTACTTCAGGGATTCTCTGAATTGTTGCCCACA 104920 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404 ||| || || |||||||| ||||| || | ||| || ||||||| ||| ||| Sbjct 104919 GGTACTCATCTGGGCTGTAGGTGTCTTTCGCCCACTCAATGAACTTAAGTATTTTGCTGC 104860 Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464 | || | || | |||| | || ||||| || || || || || || | Sbjct 104859 TTTCTAATACATATTCTACAAATTTTCTGCTAACTACAAAATAGGCACTACCAGAAAAAA 104800 Query 160465 TCG--GTA-TGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTT 160521 | | ||| || || || ||| | |||||| || ||||| | || | Sbjct 104799 TTGGAGTACTGAGT---GGTGGCAGTTGTTTGTCTATGCCTGTGTTCTTTATTTTACCAT 104743 Query 160522 TCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCT 160581 | | | | || |||| |||||||| | || | ||||| ||| | | Sbjct 104742 CAATAATCTCATGGTGCTTTTTCCACCTTAGTTCTTTATAAACAGGCATTTTTTCACTTT 104683 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | |||||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 104682 CCAGACTGTTAACACCTTTAAGGGCTTTTAATTTCTCTACCATTTCCTGGTTGGTCTTTA 104623 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCA 160701 |||||||| | || || | |||||| | ||| ||||| || | || || | Sbjct 104622 TAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTAGAACTTCTTCTGTAGA 104563 Query 160702 GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCT 160761 | || ||||||| |||||||||||||| || | |||||| || || ||||| || ||| Sbjct 104562 GATCTTTCATGCAGTTAATATCTGCCTGTACCCTGCTCCATGAGGCATACACAACACTCT 104503 Query 160762 CTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAA 160821 ||| | |||| | |||||| ||||| ||||| || || ||||| ||| || || Sbjct 104502 CTAACTGGCTGGAGATAAAGACATTATCAAAACAAGAGACTATTCCTTTCACAGCAGCAA 104443 Query 160822 AGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGA 160881 | || || | ||| ||| ||||| | ||| || | || || || || |||| Sbjct 104442 AAAAAGACTCTGGAGATTTTTTGTCAACGTGAATGCAGTAAAAATTTTGGGGGGCATAGA 104383 Query 160882 TGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTA 160941 | | || || | || || | |||||| || || |||| | ||| || ||||| || | Sbjct 104382 TTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACAATTGAGTAAGCAA 104323 Query 160942 TCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAA 161001 | ||||| || | || || | || || | | | | ||| || | |||||| | | Sbjct 104322 TTGGAAATTCTGCTTCTTCATGGCTAAGAGGTTCCATAATGTATTTCCTAGTCTTGGTGA 104263 Query 161002 AATAATCACAATCCCGCGTCATGTTGATATA 161032 | | |||| || |||||||| ||||| Sbjct 104262 AGGAGGCACAGTCTGCTGTCATGTTAATATA 104232 >seq853 Length=4682424 Score = 125 bits (138), Expect = 8e-24 Identities = 604/944 (64%), Gaps = 40/944 (4%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||| ||||| || ||||| || | |||| | || || | |||||| | Sbjct 2754293 TGTGGCGCAGGTGTTCCTCGAGACACTGAATGGCGGCATCATCCACCTGGGGGTCGAACT 2754234 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || || ||||| | ||| || |||||| |||||| || ||| | | Sbjct 2754233 TGTTGGCCAAGAGGTGGTGC---TGCTGGAGCATCCAGGACACGTCGCCCACTCCGTAGA 2754177 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 |||||||||||| |||| ||| |||| || ||||| | || || || || Sbjct 2754176 TGCAGACGGAACGCTGGTGCTGGCCAGTGCAGGGTGGGTAGGGCGCGCCCTTGCTGGTGT 2754117 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 |||| || ||||||||| || || | | || | || | |||||| ||| || | Sbjct 2754116 CACCCTCCATGTACTGCCATTTGACCAGGCGGGGCAGGGCATTCATGTCCGAGAGGTGGA 2754057 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| || | || | ||| || || || || ||||| || | || |||||||| | Sbjct 2754056 ACTTGTCACTCGGAGGCATGGCGCCTGGCACACCAGGCATGCGGTTGAGAGTGGCCCAAA 2753997 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG-ATTAACCTG 160403 || || ||||||||||| || ||||| | ||| || | ||||| || | | | Sbjct 2753996 CATGCTCATCGGGGCTGTAGGTATCCTTGGCCCACTCAAGGAACT-TCTGTGCTGTGGGG 2753938 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 ||| | | | ||| ||| ||| || || || || | ||| ||| |||| | ||| Sbjct 2753937 TCCTGAAAGATGTGCTGCACGAAGGCCCTTGTGACCACGATGTATGCGTTGCCTGTGAAC 2753878 Query 160464 ATCGG-TA-----TGGGTATAGGCGGCGTGTCTTTGT-CCTGACC-GGTGTTAGACACCA 160515 || || || |||| |||| | | ||||||| |||| || || | | ||| | Sbjct 2753877 ATGGGATAGTTGTGGGGTGGAGGC--CCTTTCTTTGTGCCTGTCCGGGAGATGGACTCTG 2753820 Query 160516 CTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTG--TGCGGTGGCATGCG 160573 | ||| |||| | | ||||| | || |||| || | || || Sbjct 2753819 CCACTT---------CGTGGTGGTATTTCCAGCGCTCCTGCTTGATGGCTGAGG---GCC 2753772 Query 160574 T-TCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGT 160632 | || | ||| | |||||| || | || ||||| || |||||| | Sbjct 2753771 TCTCTGACTCCATACTGTTCTGTCCCTGTAGGACCTTCAGGGCACGGATGATCTCGCCAT 2753712 Query 160633 TCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCA 160692 | ||||||| ||||| ||||| || || ||| | | || ||| | || | Sbjct 2753711 TGGTCTTGATGGGAAAATCGGTGCCACAGGTGTTGAGGAGATAGCGCCA--TGGCACGGG 2753654 Query 160693 GGTC-GT-GCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTA 160750 | || || ||||||| |||||| || | || ||||||| ||| |||||| || || Sbjct 2753653 GCTCTGTAACAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAACCGGGACCAGGAGGCATA 2753594 Query 160751 CACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCC-- 160808 || || || || || | || ||||||||||| || ||| || | | || || Sbjct 2753593 GACCACCTTTTCCAGATGGCTAGCCACAAAGACATTGGGGAAGCAAGCTGCTATGGCCCG 2753534 Query 160809 -ACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTT 160867 || || || | ||| || || | ||| ||||| | ||| | ||| |||| || Sbjct 2753533 TACAGCCTCCTGGAAG-GCAGCT--GGGGACTTGCGGTCAATGTGGATGCAGTACACATT 2753477 Query 160868 CTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCAC 160927 ||| || || |||| || || || | || ||| ||||| || || || | ||||| || Sbjct 2753476 CTGCGGAGCATAGACGGACCGCAGAAGCCGCTCAAACATTTCAATTTTGTTGTGGATGAC 2753417 Query 160928 GATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGG 160971 || |||||||| || || ||||| | ||||| ||||||||| Sbjct 2753416 CATGGAGTAGGCGATGGGGAACTCTGCTTCCTCTTGACTCAGGG 2753373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576993694889040