Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1784 176 5e-38 seq533 116 5e-20 seq535 109 7e-18 seq534 89.7 6e-12 >seq1784 Length=1209555 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 1130103 GCTTGGCCAGCTCACCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1130044 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 1130043 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 1129984 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 1129983 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 1129924 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1129923 GCACCTGCTTCAGCACCTTGTA 1129902 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 1145492 GCTTGGCCAGCTCACCAGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1145433 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 1145432 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 1145373 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 1145372 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 1145313 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1145312 GCACCTGCTTCAGCACCTTGTA 1145291 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 1105588 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1105647 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || |||||||||| || ||||||| | | ||||| |||| | Sbjct 1105648 TGGTGGAGCGCTTATTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCAATGCGCTCGAAGA 1105707 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1105708 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCCGTGTCGGGGT 1105767 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1105768 GCACCTGCTTCAGCACCTTGTA 1105789 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 1188258 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1188199 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||| ||| | ||||||| |||| | Sbjct 1188198 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCTTCGCCGGCGATGCGCTCGAAGA 1188139 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||| |||||| |||||||| Sbjct 1188138 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAAATGCCCGTGTCGGGGT 1188079 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 ||||||| || ||||||||||| Sbjct 1188078 GCACCTGTTTCAGCACCTTGTA 1188057 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 1208872 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1208931 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||| | | ||||| |||| | Sbjct 1208932 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAAGCCTCACCGGCAATGCGCTCGAAGA 1208991 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 1208992 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 1209051 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1209052 GCACCTGCTTCAGCACCTTGTA 1209073 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 1194581 GCTTGGCCAGCTCACCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1194522 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||| | | ||||| |||| | Sbjct 1194521 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAAGCCTCACCGGCAATGCGCTCGAAGA 1194462 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1194461 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCCGTGTCGGGGT 1194402 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 ||||||| || ||||||||||| Sbjct 1194401 GCACCTGTTTCAGCACCTTGTA 1194380 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || |||||||| ||||||||||| ||| | || Sbjct 1195449 GCTTGGCCAGCTCACCGGGCAGCCGCAACCGCACGGCCGTCTGGATCTCCCGCAAGGTGA 1195508 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | |||| || |||| | Sbjct 1195509 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCACCGGCGATACGCTCGAAGA 1195568 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || ||||| |||| ||| | |||| ||||||||| |||||||| Sbjct 1195569 TGTCGTTGACGAAGGAGTTAATGATGCCCATGGCCTTGGAAGAGATGCCCGTGTCGGGGT 1195628 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 ||||||| || ||||||||||| Sbjct 1195629 GCACCTGTTTCAGCACCTTGTA 1195650 >seq533 Length=2342826 Score = 116 bits (128), Expect = 5e-20 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | ||||||||| || ||||||||||| || | | || Sbjct 1470809 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACAGCTGTCTGGATCTCCCGGGAGGTGA 1470868 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| ||| || || | ||||| || | | Sbjct 1470869 TGGTAGAGCGCTTGTTGTAATGGGCCAGGCGGGATGCTTCTCCAGCAATGCGCTCAAAGA 1470928 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 1470929 TGTCGTTGACGAAAGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCAGGGT 1470988 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||| ||||||| Sbjct 1470989 GGACCTGCTTCAGCACTTTGTAGA 1471012 >seq535 Length=245707 Score = 109 bits (120), Expect = 7e-18 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||| | ||||||||||||||| |||||||||||||| || ||||| ||||| ||||||| Sbjct 89874 CGGCCAGGCCGATGCCGCCGGCGGACTTGGAGATGAGGGCACACTGCTTGAGGGTGTCGT 89815 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277 ||||||| ||||| |||| |||||||| || || ||||| Sbjct 89814 AGATGCCTTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 89772 Score = 98.7 bits (108), Expect = 1e-14 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || ||||| ||||| |||||| || | | || |||||||||||||||||| | || Sbjct 94325 ACAATCTCAGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 94266 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || |||||||| |||||||||||| | ||| ||||| |||| | | ||| | Sbjct 94265 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCTGTCTGGGACTCGATG 94206 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 |||| |||||| ||| | || ||| || |||| | ||||||| Sbjct 94205 ATGGAGTACCAGAGCTGCTGAGCCTTCACCACGCGCCGCACCCGGCCCT 94157 >seq534 Length=137614 Score = 89.7 bits (98), Expect = 6e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 507105 AGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 507164 |||| | ||||| |||||||| ||| | | ||||| ||||||||||| || ||| Sbjct 68246 AGCGCCTGAAGGGGAAGGAGGGCAGGGTGAGAGGCAACCTGATGGGCAAGCGGGTGGACT 68305 Query 507165 TTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGC 507224 | | || ||| ||||||||| |||||||||| | | | ||| ||| |||||||||||| Sbjct 68306 TCTCGGCCCGCACCGTCATCACCCCCGACCCCAACCTGGCCATCGACCAGGTGGGCGTGC 68365 Query 507225 CC 507226 || Sbjct 68366 CC 68367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104574350397518