Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1784 219 7e-51 seq533 165 1e-34 seq1785 152 8e-31 seq535 96.9 5e-14 seq2132 93.3 7e-13 seq534 89.7 8e-12 >seq1784 Length=1209555 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || || ||| Sbjct 1145531 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCACCAGGCA 1145472 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1145471 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1145412 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 1145411 GCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1145352 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| |||||||||||||||||| |||||||||| Sbjct 1145351 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1145292 Query 1485710 AAAC 1485713 | || Sbjct 1145291 ACAC 1145288 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 1130142 TGTATTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCACCGGGCA 1130083 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1130082 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1130023 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||| ||||| || ||||||| Sbjct 1130022 GCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCATTGACGAAGGAGTTCA 1129963 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| |||||||||||||||||| |||||||||| Sbjct 1129962 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1129903 Query 1485710 AAAC 1485713 | || Sbjct 1129902 ACAC 1129899 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 1208833 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 1208892 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1208893 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1208952 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||| | | ||||| |||| ||||||||||| || ||||||| Sbjct 1208953 GCGCCAGGCGAGAAGCCTCACCGGCAATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1209012 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| |||||||||||||||||| |||||||||| Sbjct 1209013 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1209072 Query 1485710 AAAC 1485713 | || Sbjct 1209073 ACAC 1209076 Score = 206 bits (228), Expect = 4e-47 Identities = 192/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || ||||| || ||||||||| ||||||| || ||| ||| Sbjct 1188297 TGTACTTGGTGACAGCCTTAGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 1188238 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1188237 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1188178 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||| ||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 1188177 GCGCCAGGCGAGAGGCTTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1188118 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||| |||||| ||||||||||||||| || |||||||||| Sbjct 1188117 TGATGCCCATGGCCTTGGAGGAAATGCCCGTGTCGGGGTGCACCTGTTTCAGCACCTTGT 1188058 Query 1485710 AAAC 1485713 | || Sbjct 1188057 ACAC 1188054 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| ||||| || ||||| || ||||||||| ||||||| || ||| ||| Sbjct 1105549 TGTACTTAGTGACAGCCTTAGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 1105608 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| |||||| || | Sbjct 1105609 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTATTGTAGT 1105668 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | | ||||| |||| ||||||||||| || ||||||| Sbjct 1105669 GCGCCAGGCGAGAGGCCTCGCCGGCAATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1105728 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 1105729 TGATGCCCATGGCCTTGGAAGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1105788 Query 1485710 AAAC 1485713 | || Sbjct 1105789 ACAC 1105792 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || |||||| ||||||| || ||| ||| Sbjct 1194620 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACAGCGTGCTTGGCCAGCTCACCGGGCA 1194561 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1194560 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1194501 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||| | | ||||| |||| ||||||||||| || ||||||| Sbjct 1194500 GCGCCAGGCGAGAAGCCTCACCGGCAATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1194441 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||||||||| || |||||||||| Sbjct 1194440 TGATGCCCATGGCCTTGGAAGAGATGCCCGTGTCGGGGTGCACCTGTTTCAGCACCTTGT 1194381 Query 1485710 AAAC 1485713 | || Sbjct 1194380 ACAC 1194377 Score = 183 bits (202), Expect = 5e-40 Identities = 187/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || ||||| || ||||||||| ||||||| || ||| ||| Sbjct 1195410 TGTACTTGGTGACAGCCTTAGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCACCGGGCA 1195469 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 1195470 GCCGCAACCGCACGGCCGTCTGGATCTCCCGCAAGGTGATGGTGGAGCGCTTGTTGTAGT 1195529 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | |||| || |||| ||||||||||| || ||||| | Sbjct 1195530 GCGCCAGGCGAGAGGCCTCACCGGCGATACGCTCGAAGATGTCGTTGACGAAGGAGTTAA 1195589 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||||||||| || |||||||||| Sbjct 1195590 TGATGCCCATGGCCTTGGAAGAGATGCCCGTGTCGGGGTGCACCTGTTTCAGCACCTTGT 1195649 Query 1485710 AAAC 1485713 | || Sbjct 1195650 ACAC 1195653 >seq533 Length=2342826 Score = 165 bits (182), Expect = 1e-34 Identities = 183/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| |||||||||||||| ||| ||||||| || || | | Sbjct 1470770 TGTACTTGGTGACAGCTTTGGTGCCCTCTGAGACGGCATGCTTGGCCAGCTCTCCTGGGA 1470829 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||||||||| |||| | ||| || ||||||||| Sbjct 1470830 GCAGCAGGCGCACAGCTGTCTGGATCTCCCGGGAGGTGATGGTAGAGCGCTTGTTGTAAT 1470889 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| || || | ||||| || | ||||||||||| || ||||||| Sbjct 1470890 GGGCCAGGCGGGATGCTTCTCCAGCAATGCGCTCAAAGATGTCGTTGACGAAAGAGTTCA 1470949 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| ||||| |||| Sbjct 1470950 TGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCAGGGTGGACCTGCTTCAGCACTTTGT 1471009 Query 1485710 AAAC 1485713 | || Sbjct 1471010 AGAC 1471013 >seq1785 Length=4856982 Score = 152 bits (168), Expect = 8e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| ||||| |||||| ||||||| |||| ||| Sbjct 836836 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCGCGCCAGGCA 836777 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||| || ||||| | ||||||| || ||| ||| ||||| ||| | Sbjct 836776 GCAGCAGCCTCACCGCCGTCTGCACCTCGCGGCTGGAGATGGTGGAGCGCTGGTTGTAGT 836717 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| ||||| | | | | ||| |||| ||||| |||||||| ||||||| Sbjct 836716 GGGCTAGGCGGGACGCCTCCGAGGCCAGGCGCTCGAAGATGTCATTGACAAAGGAGTTCA 836657 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 |||| ||| | || ||||||||| ||| ||||| |||||| Sbjct 836656 TGATGCTCATGGCCTTAGAGGAGATGCCAGTGTCTGGGTGGACCTGC 836610 >seq535 Length=245707 Score = 96.9 bits (106), Expect = 5e-14 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709 |||| | ||||||||||||||| | |||||||||||| || |||| || || || |||| Sbjct 89874 CGGCCAGGCCGATGCCGCCGGCGGACTTGGAGATGAGGGCACACTGCTTGAGGGTGTCGT 89815 Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||||||| ||||| |||| |||||||| || ||| ||||| Sbjct 89814 AGATGCCTTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 89772 >seq2132 Length=409716 Score = 93.3 bits (102), Expect = 7e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 794584 GGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATG 794643 |||||||||| |||||||||||| || || ||| |||| ||||||||||| || ||| Sbjct 87206 GGGTCCTTGATGTAGGTGTCGATCAGCAGGCTGTACATCTCCGAGTGGATGTTCTCCATG 87147 Query 794644 GCGATCTGGAAGCCATAAAAGCAG 794667 |||||||||||||| || |||||| Sbjct 87146 GCGATCTGGAAGCCGTAGAAGCAG 87123 Score = 91.5 bits (100), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||| ||||| |||||||| ||| || ||| Sbjct 86265 ACCTCCTCTGCCGTCCAGAAGGAGGCCTCAGCCTTCTTGTACATGCGCCAGATGTCGTGG 86206 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || ||||| |||||| || || ||||||||||| Sbjct 86205 TACTGGATGGGGAAGATGACGAAGCGCCGGGGGTTGTCCCGCAGCAGCGGCTC 86153 >seq534 Length=137614 Score = 89.7 bits (98), Expect = 8e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 429061 AGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 429120 |||| | ||||| ||||||||| || | | ||||| ||||||||||| || ||| Sbjct 68246 AGCGCCTGAAGGGGAAGGAGGGCAGGGTGAGAGGCAACCTGATGGGCAAGCGGGTGGACT 68305 Query 429121 TTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGC 429180 | |||| ||| ||||||||| ||||||||| | | | ||| ||| |||||||||||| Sbjct 68306 TCTCGGCCCGCACCGTCATCACCCCCGACCCCAACCTGGCCATCGACCAGGTGGGCGTGC 68365 Query 429181 CC 429182 || Sbjct 68366 CC 68367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912921769470506