Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq226 167 2e-35 seq1442 89.7 4e-12 >seq226 Length=3542419 Score = 167 bits (184), Expect = 2e-35 Identities = 931/1471 (63%), Gaps = 28/1471 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| | ||||| || |||||||||||||| | ||||| ||||| || || || ||||| Sbjct 1160856 GCACTGACATTCAGGATACCATTGGCATCAATGTCAAAAGTGACCTCGATCTGGGGGACT 1160915 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | || || ||||| ||| | | |||| | ||||| || || || || Sbjct 1160916 CCACGGGGTGCTGGGGGGATGCCTGTTAGGTCAAATTTGCCCAGTAAGTTGTTGTCCTTC 1160975 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 281603 || | | |||||||| | | |||| || | ||| | | || || || || | Sbjct 1160976 GTCATGGCCCTCTCACCCTCATACACCTGGACCAGGACACTGC--TCTGGTTGTCAGAGT 1161033 Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || |||| ||| ||| ||||| || || || | | || | | Sbjct 1161034 AGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTATTGCGCTTGATGAGAGCA 1161092 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||||||||| || | || | ||| ||||| |||||||| | || | Sbjct 1161093 GTCATCACTCCACCAGCTGTCTCGATGCCCAAAGACAGAGGGGTGACATCCAACAGCAGC 1161152 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || || | || ||| | | || | ||| ||||||||||| | |||||||||| Sbjct 1161153 AAATCCTGCACATTCTCAGACTTGTCTCCCATAAGGATAGCTGCTTGCACAGCAGCACCA 1161212 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 ||||||||||| |||||||| || | | | || || | ||| |||||||| || | Sbjct 1161213 TATGCAACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 1161272 Query 281843 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902 ||||| | | | ||| || ||||||| || || || || | ||||| || || Sbjct 1161273 TGTAGAAGCTTTTGGATCTTGGGGATACGAGTGGAGCCACCCACCAGCACAATCTCCTGG 1161332 Query 281903 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT 281962 | ||| || || || || | ||| | | | || || || ||||| || | Sbjct 1161333 ATCTGGCCCTTGTCTAGCTTAGCATCACGCAGAGCCTTCTCCACTGGTTCCAGGGTGCCA 1161392 Query 281963 CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCA 282022 | || | |||| | || || ||||| || | |||| || | | | ||| Sbjct 1161393 CGGAAGAGATCTGCATTGAGCTCCTCGAAGCGGGCACGTGTAATAGAGGTGTAGAAGTCA 1161452 Query 282023 ATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA--AGATAGTGCAC 282080 || || || || | || |||| ||||| ||| ||| || ||||| || |||| | Sbjct 1161453 ATGCCCTCAAAAAGGGAGTCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGAGTG--C 1161510 Query 282081 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAA 282138 | || || | ||||| ||||| | |||| | | || | ||| ||| | | Sbjct 1161511 GCTTTGCTCTCTCACAAGCTGTACGCAGTCGCCTCACTGC--TCGCTTGTTGCCAGCAAT 1161568 Query 282139 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCA 282196 || || | || | ||||| ||||| |||| ||| | || | || || ||| Sbjct 1161569 GTCACGCTTGTGCTTACGTTTGAATTCTTC--CACAAAATGGTTCACCATGCGGTTGTCA 1161626 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256 || || || || |||| | || | || | || | | || | || | ||||| Sbjct 1161627 AAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATCC 1161686 Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316 || | || | | | |||||| || || || |||| ||||| || || |||||| Sbjct 1161687 TCGATAGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATTC 1161746 Query 282317 ATTTCT-TTGTCTTGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 | ||| || | ||| || || || | ||||| || | ||||| || || || Sbjct 1161747 TTCTCTCCTGCCCTGGTACCTTTCTTGTCCAAGCCATAGGCTATTGCAGCTGCTGTGGGC 1161806 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 ||||| ||||| | || ||||||||||||| || | || |||||||| ||||| || Sbjct 1161807 TCATTGATAATACGCATCACATTAAGACCAGTGATGGTACCAGCATCTTTGGTGGCCTGG 1161866 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTCC 282489 | || || ||||| || || ||||| || || || || ||| ||||| ||| || Sbjct 1161867 CGCTGGGAGTCGTTGAAGTAAGCAGGCACTGTGATGACAGCATTCTGTACCTTGCGCCCC 1161926 Query 282490 AATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 282549 || ||| || || | | ||||| || | | | ||| || || | ||||| Sbjct 1161927 AA-ATAGGCCTCCGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCTGG 1161985 Query 282550 AGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 282608 ||| | | ||| ||| | || |||| | | ||||| ||| | | Sbjct 1161986 -GAAGAAGGTCTTCATCTCACCCTTGTACTCCACTTGCACCTTGGGTTTGCCACCCTCGT 1162044 Query 282609 TAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTC 282668 | | || || ||||| | ||||| || || || || | |||||| | | | | Sbjct 1162045 TTACCACACGGAAGGGCCAGTGCTTCATGTCAGACTGCACCGTGGGGTCATCATACTTGC 1162104 Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728 || || | ||||| ||||| || || || ||||| || || | || | || | | Sbjct 1162105 GGCCGATGAGGCGTTTGGCATCGAAGATGGTGTTGGTAGGGTTCATAGCCACCTGGTTCT 1162164 Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788 |||| |||||||| || || ||||||| || || || | ||||| || || |||| Sbjct 1162165 TGGCAGCATCTCCGATGAGGCGTTCTGTATCGGTGAAGGCGACATAGCTGGGTGTGGTGC 1162224 Query 282789 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 282848 | || || |||||||| || || || || || || |||| || | ||||| ||||| Sbjct 1162225 GGTTGCCCTGATCATTGGCGATGATCTCCACCTTGCCATGCTGGAAGACACCCACACAGG 1162284 Query 282849 TAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 | || || || || ||||| || || || Sbjct 1162285 AGTATGTGGTGCCCAAGTCAATGCCGATTGC 1162315 >seq1442 Length=2453758 Score = 89.7 bits (98), Expect = 4e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 ||||||||| || || |||||||| |||| ||||| || |||||||||||||| | Sbjct 2132892 CTTTGTCTTCAGACTTGTCCAGACCATAGGCAAGTGCAGCTGCTGTTGGTTCATTAATCA 2132951 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 |||||||||||| | ||||| || || |||||||||||||| || Sbjct 2132952 CTCTCAAAACATTCAAGCCAGCGATCTGCCCAGCATCTTTAGTGGCCTG 2133000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739095960679404