Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq2132 104 2e-17 >seq2132 Length=409716 Score = 104 bits (114), Expect = 2e-17 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 ||||| ||||| || | ||||| || | || |||| || |||| |||| ||||| Sbjct 237030 AGCATCTGGGGCCCGACGTGCGACGGGCTGGACCGCATCGTGGAGCGCTGTGCCCTGCCC 236971 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244 ||||| || |||||||||||| | | ||||| |||||||| || |||| || | |||| Sbjct 236970 GAGCTGCAGGTGGGCGACTGGGTGCTGTTTGAGAACATGGGAGCCTACA-CTGTGGCAGC 236912 Query 21245 -TCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTC 21294 | || ||||| |||||||||| | ||||| || |||||||| || || Sbjct 236911 AGCCTCCACCTTCAACGGCTTCCAGAGGCCAGCAATACACTATGTCATCTC 236861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463364504322720