Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq4511 114 2e-20 >seq4511 Length=1110828 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||| ||| | |||||||| || ||||| || ||||| || || ||||| Sbjct 433383 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACTGTATTCTTCATC 433442 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| || || || || | || || || || || ||||| ||||| || ||||| Sbjct 433443 CTGAGGAAGAAATTCAACCAAATCAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 433502 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || || | ||| | |||||||| ||| ||||||| || || Sbjct 433503 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 433543 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 || || |||||||||||| |||| || ||||| ||||| || ||||| | |||||||| Sbjct 437988 GCTTTCTTCGGCGCTCAGATGAACTCGTTTATTCATGTCATCATGTACATGTATTATGGA 438047 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | || ||| | ||||| | |||||||| || ||| | || ||| Sbjct 438048 TTAGCTGCCTGTGGCCCTAAATTTCAGAAGTACCTGTGGTGGAAACGATACTTGACCATA 438107 Query 58661 ATGCAATTGGTA 58672 |||| |||||| Sbjct 438108 TTGCAGTTGGTA 438119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903058259829440