Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1614 145 9e-30 >seq1614 Length=2086781 Score = 145 bits (160), Expect = 9e-30 Identities = 427/649 (66%), Gaps = 13/649 (2%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| ||||||| |||| | ||| || ||||||| |||| | || | |||| Sbjct 2029208 GCCAGCTCTCTAGGGGAGAGAAAGTCTTCCACATGTATGAAAGAGTCTGCTGGAATGTAA 2029267 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| || | || ||||| | ||||| | || |||| ||||| Sbjct 2029268 TTCTCATAGTTTTCTCTGGAGGGGCCCAGTACAACTGGTACTGATCCGGCCAGAAGAGCA 2029327 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || || || || ||| |||| | ||| || ||||| | || |||||| Sbjct 2029328 TTGTAAAGTTTCTCAGTGATGTAATCCTTGTGGATGGAATTTTCAAAGGAAAGGTAGAAT 2029387 Query 177126 TTACAGGA--AGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 || || | ||||||| | |||| |||| | || | ||| ||||| | | | Sbjct 2029388 TTGCAAGTGGAGATAGTTG--GGATCAAGTTTTTGTCATTGACATAGTCTCCAAAGGCTT 2029445 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 ||| || || || || |||| ||| || ||||| ||| || || || || || Sbjct 2029446 GCCCATAGGTGTGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCG 2029504 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGA 177302 || || |||||| || || || ||||| || || || || ||| || || Sbjct 2029505 TGCTCAGGGTTCCAGTTACTTACAACCCAACAGACCAAGTTTTCCTTACTTGGCAC---- 2029560 Query 177303 TTCGATACT-AATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | | || | | | || | | | | | ||||| ||||| |||||||| || Sbjct 2029561 TTCAAATGTCAAGGAACTTGTTCCCACCATCATGAAGCCATAAGGCACCTGAATATCTGA 2029620 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCT-TGTTTGAAGGGGC 177420 || || | ||| || | || || || || |||| ||| || || | ||| || | Sbjct 2029621 ATCACGCCGGTAAGTCAGGGTCAGGTTAAAGAGGTGTTCAATGCCACTCTTTTGTGGAG- 2029679 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 ||| | | || || || ||||||||||| |||||||| || || | ||| |||| || | Sbjct 2029680 TGTGAGTTGGAGACTCCAAGTTCATCCAGATCCACTTCTGGAATGGTGGCCTGGCTTGCT 2029739 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTT 177540 ||||| | || |||| || || || ||||| |||| || || |||| || | Sbjct 2029740 GAGGTAAATTAGTCAGATCCCAGCTGATGTCCCTGTGATGAATGAGAACAGCATGGGATC 2029799 Query 177541 TGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAA 177589 ||| ||| | || | ||| | || | || ||| || | ||||| || Sbjct 2029800 TGTTATATAGTGAGCGGTCAATAGTCAGATGGCACCCATGGATGTTGAA 2029848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578206021078400