Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq3619 123 8e-25 seq2141 118 3e-23 seq3615 114 4e-22 seq2084 114 4e-22 seq599 113 1e-21 seq31254 98.7 3e-17 seq4132 98.7 3e-17 seq2752 98.7 3e-17 seq1932 98.7 3e-17 seq2997 86.0 2e-13 >seq3619 Length=1584751 Score = 123 bits (136), Expect = 8e-25 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 807890 GGCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 807831 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 807830 CCCGGGCTTCAGC 807818 >seq2141 Length=851214 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 740345 GGCTGAAGTAGCTCAGATGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 740404 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 740405 CCCGGGCTTCAGC 740417 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 753782 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 753723 Query 2829 CCGGGCTTCAGC 2840 || ||||||||| Sbjct 753722 CCAGGCTTCAGC 753711 >seq3615 Length=1582886 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 390404 GGCTGAAGTAGCTCAGATGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCACT 390345 Query 2828 CCCGGGCTTCAGC 2840 ||| ||||||||| Sbjct 390344 CCCAGGCTTCAGC 390332 >seq2084 Length=2859976 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 2487646 GGCTGAAGTAGCTCAGATGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 2487705 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 2487706 CCCGGGCTTCAGC 2487718 >seq599 Length=227957 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 83564 GGCTGAAGTAGCTCAGATGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCACT 83505 Query 2828 CCCGGGCTTCAG 2839 ||| |||||||| Sbjct 83504 CCCAGGCTTCAG 83493 >seq31254 Length=8300616 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 734046 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 734105 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 734106 CCGGGTTTCGGC 734117 >seq4132 Length=2132400 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1756651 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1756592 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1756591 CCGGGTTTCGGC 1756580 >seq2752 Length=1052913 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 364996 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 364937 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 364936 CCGGGTTTCGGC 364925 >seq1932 Length=244659 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 85865 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 85806 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 85805 CCGGGTTTCGGC 85794 >seq2997 Length=2773723 Score = 86.0 bits (94), Expect = 2e-13 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 691012 GCTGAAATAGCTCAGTTGGGAGACTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCA 690956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15844181962830