Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq3492 125 8e-24 >seq3492 Length=1229997 Score = 125 bits (138), Expect = 8e-24 Identities = 129/166 (78%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || || ||||| | |||||| |||||||| || |||||||| |||||||| Sbjct 1206520 CTTCAGGCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATGTTGAA 1206579 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTC-CCCGT 147100 || || ||||| ||||| || || ||||||||||| |||||||| || | || || | Sbjct 1206580 AGGCACTCCCAGTCCCATATCTCCAGACCTCTGGTAGAGCTGGCAAGACAATTCACCACT 1206639 Query 147101 CGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 | | || || |||||||||||| ||||| || |||| ||||| Sbjct 1206640 CTG-AACATAGAACTGGCACAGGGCATGGCATGGAGGCAAAGCCAT 1206684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260045825600