Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1784 197 2e-44 seq533 129 8e-24 seq1785 118 2e-20 seq535 102 1e-15 seq2132 98.7 1e-14 seq534 95.1 2e-13 >seq1784 Length=1209555 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| ||| |||| ||||| Sbjct 1129902 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 1129955 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||| ||||| |||| ||||||| | ||||||| |||| Sbjct 1129956 GGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGC 1130015 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 1130016 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 1130075 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1130076 CTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1130124 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| ||| |||| ||||| Sbjct 1145291 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 1145344 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| |||| Sbjct 1145345 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGC 1145404 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 1145405 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 1145464 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||||| ||||||||| ||||||||||||| Sbjct 1145465 CTGCTGCTGCCTGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1145513 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| ||| |||| ||||| Sbjct 1209073 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 1209020 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||| | | ||||| |||| Sbjct 1209019 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATTGCCGGTGAGGCTTCTCGC 1208960 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 1208959 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 1208900 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1208899 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1208851 Score = 185 bits (204), Expect = 1e-40 Identities = 178/227 (78%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 1105789 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCTTCCAAGGCCATG 1105736 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||| | | ||||||| |||| Sbjct 1105735 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATTGCCGGCGAGGCCTCTCGC 1105676 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || ||| |||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 1105675 CTGGCGCACTACAATAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 1105616 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || ||||||| ||||||||| ||||||||||| Sbjct 1105615 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 1105569 Score = 181 bits (200), Expect = 2e-39 Identities = 177/227 (78%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| || |||||||||||| || || ||| ||| |||| ||||| Sbjct 1188057 TACAAGGTGCTGAAACAGGTGCACCCCGACAC-----GGGCATT-TCCTCCAAGGCCATG 1188110 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||| ||| |||| Sbjct 1188111 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAAGCCTCTCGC 1188170 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 1188171 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 1188230 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || ||||||| ||||||||| || |||||||| Sbjct 1188231 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCAC 1188277 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| || |||||||||||| || || |||| || |||| ||||| Sbjct 1194380 TACAAGGTGCTGAAACAGGTGCACCCCGACAC-----GGGCATC-TCTTCCAAGGCCATG 1194433 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||| | | ||||| |||| Sbjct 1194434 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATTGCCGGTGAGGCTTCTCGC 1194493 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 1194494 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 1194553 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| |||||| || ||||||||||||| Sbjct 1194554 CTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCTGTGTCCGAGGGCACCA 1194602 Score = 163 bits (180), Expect = 4e-34 Identities = 173/227 (76%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| || |||||||||||| || || |||| || |||| ||||| Sbjct 1195650 TACAAGGTGCTGAAACAGGTGCACCCCGACAC-----GGGCATC-TCTTCCAAGGCCATG 1195597 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||| ||||| || ||||||||||| |||| || |||| | |||||| |||| Sbjct 1195596 GGCATCATTAACTCCTTCGTCAACGACATCTTCGAGCGTATCGCCGGTGAGGCCTCTCGC 1195537 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | ||| ||||||||||| |||||||| Sbjct 1195536 CTGGCGCACTACAACAAGCGCTCCACCATCACCTTGCGGGAGATCCAGACGGCCGTGCGG 1195477 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| ||| || ||||||| ||||||||| ||||||||||| Sbjct 1195476 TTGCGGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 1195430 >seq533 Length=2342826 Score = 129 bits (142), Expect = 8e-24 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||| ||||| |||||||| ||||| || ||| |||| ||| |||| ||| Sbjct 1471012 TCTACAAAGTGCTGAAGCAGGTCCACCCTGACAC---TGG--CATC-TCCTCCAAGGCCA 1470959 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| | || ||||| | || || | Sbjct 1470958 TGGGCATCATGAACTCTTTCGTCAACGACATCTTTGAGCGCATTGCTGGAGAAGCATCCC 1470899 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | |||||||||| || ||| | | || ||||||||||| || |||| Sbjct 1470898 GCCTGGCCCATTACAACAAGCGCTCTACCATCACCTCCCGGGAGATCCAGACAGCTGTGC 1470839 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | | | || || ||||||| ||| |||||||| |||||||||| Sbjct 1470838 GCCTGCTGCTCCCAGGAGAGCTGGCCAAGCATGCCGTCTCAGAGGGCACCA 1470788 >seq1785 Length=4856982 Score = 118 bits (130), Expect = 2e-20 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| ||||||||||| |||||||| ||||| |||| ||| | | | | ||| Sbjct 836641 AAGGCCATGAGCATCATGAACTCCTTTGTCAATGACATCTTCGAGCGCCTGGCCTCGGAG 836700 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||||| || | || |||| ||||| ||| ||| || |||||| | ||||| Sbjct 836701 GCGTCCCGCCTAGCCCACTACAACCAGCGCTCCACCATCTCCAGCCGCGAGGTGCAGACG 836760 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| | ||| | ||| |||| ||||||| |||||| |||||||||||||||| Sbjct 836761 GCGGTGAGGCTGCTGCTGCCTGGCGCGCTGGCCAAGCACGCTGTCTCCGAGGGCACCA 836818 >seq535 Length=245707 Score = 102 bits (112), Expect = 1e-15 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| |||| ||| | |||| | ||||| ||||| ||||||||| ||||| Sbjct 94189 CAGCTCTGGTACTCCATCATCGAGTCCCAGACAGAGACTGGCACCCCCTACATGCTCTAC 94248 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||| || |||| || ||||||||||||||||||||||||| | || | ||| Sbjct 94249 AAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 94307 Query 262210 CCTGTGCACCGAGATCGT 262227 ||| ||||| ||||| || Sbjct 94308 CCTCTGCACTGAGATTGT 94325 Score = 100 bits (110), Expect = 4e-15 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| ||| || |||||||| ||| ||||| |||||||| ||||| ||||||||| Sbjct 89772 TGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTCAAGCAG 89831 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 || || |||||||||||| | |||||||||||||| | |||| Sbjct 89832 TGTGCCCTCATCTCCAAGTCCGCCGGCGGCATCGGCCTGGCCG 89874 >seq2132 Length=409716 Score = 98.7 bits (108), Expect = 1e-14 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1455964 GAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATC 1456023 ||||| || || | |||||||| | || ||||| |||||||||||||| || |||||| Sbjct 87100 GAGGTGCAGGTGACCGAGGCACGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACATC 87159 Query 1456024 CACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 ||||| || | ||| || ||||||||||||||| |||||||||| Sbjct 87160 CACTCGGAGATGTACAGCCTGCTGATCGACACCTACATCAAGGACCC 87206 Score = 89.7 bits (98), Expect = 7e-12 Identities = 89/114 (78%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || ||||| ||||| ||| | |||||||||| ||||| Sbjct 86153 GAGCCGCTGCTGCGGGACAACCCCCGGCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 86212 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| ||||| ||| ||||| ||||||||||| ||||| || |||||||| Sbjct 86213 ATCTGGCGCATGTA-CAAGAAGGCTGAGGCCTCCTTCTGGACGGCAGAGGAGGT 86265 >seq534 Length=137614 Score = 95.1 bits (104), Expect = 2e-13 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 1818069 ATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACG 1818128 ||| | |||||||| ||| ||||| ||||| | | | |||| ||||||| Sbjct 68420 ATGTTGAAGGGCGTGACGATCTCGGCGAAGGTCATGTTGGCGGCGATGGAGCGGGGCACG 68361 Query 1818129 CCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTG 1818188 ||||||| ||| ||| | | | |||||||||| ||||||||| ||| || | |||| Sbjct 68360 CCCACCTGGTCGATGGCCAGGTTGGGGTCGGGGGTGATGACGGTGCGGGCCGAGAAGTCC 68301 Query 1818189 ACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCT 1818243 || ||||||||||| ||||| | | |||||||||||| ||||| | |||| Sbjct 68300 ACCCGCTTGCCCATCAGGTTGCCTCTCACCCTGCCCTCCTTCCCCTTCAGGCGCT 68246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174796694255148