Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1619 120 4e-22 >seq1619 Length=3721367 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | ||| || || || || ||||||||||| | || | ||| | Sbjct 1314462 CCTCATCCCTGCTAATAAGTTCATTGGAGAAGGTCAGTCCAGGCATCAAGCCTCTCTTCT 1314521 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || |||||||| || || || |||||||||||||| ||||| ||||| | Sbjct 1314522 TCAGCCAAAAGATAGCAGCAAAGGAACCCGAGAAGAAGATGCCTTCAACTGCAGCAAAGG 1314581 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 1314582 CAACCACTCTCTCACC 1314597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686640441904560