Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq226 235 2e-56 seq3246 134 4e-26 seq31254 104 7e-17 seq4520 104 7e-17 seq2862 93.3 1e-13 >seq226 Length=3542419 Score = 235 bits (260), Expect = 2e-56 Identities = 946/1470 (64%), Gaps = 35/1470 (2%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || || || || || || || || || ||||| | ||| | || ||| Sbjct 1162315 GCAATCGGCATTGACTTGGGCACCACATACTCCTGTGTGGGTGTCTTCCAGCATGGCAAG 1162256 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || || || |||||||| || ||| | || || || || || || || ||| Sbjct 1162255 GTGGAGATCATCGCCAATGATCAGGGCAACCGCACCACACCCAGCTATGTCGCCTTCACC 1162196 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || || || | || || ||| |||| || || || | ||| || || | || Sbjct 1162195 GATACAGAACGCCTCATCGGAGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 1162136 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || | || ||||| || || || || || | | | | |||| | || ||| Sbjct 1162135 ACCATCTTCGATGCCAAACGCCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCT 1162076 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | || || | || || ||| || ||| || |||| ||||| | | | Sbjct 1162075 GACATGAAGCACTGGCCCTTCCGTGTGGT---AAACGAGGGTGGCAAACCCAAGGTGCAA 1162019 Query 349499 GTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 || || || || ||||| | || || || || || || || || || ||||| | Sbjct 1162018 GTGGAGTACAAGGGTGAGATGAAGACC-TTCTTCCCAGAGGAGATCAGCTCCATGGTCCT 1161960 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || |||||||| ||||| || || ||||| || | ||| ||||||| || Sbjct 1161959 TACCAAGATGAAGGAGATTGCGGAGGCCTATTTGGGGCGCAAGGTACAGAATGCTGTCAT 1161900 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 || || || || || || || || ||||||| || || ||||||||||| | ||| Sbjct 1161899 CACAGTGCCTGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAAGATGCTGGTACCAT 1161840 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 | || | ||||| | | || || ||||| ||||| || || ||||| || ||||| Sbjct 1161839 CACTGGTCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCAATAGCCTATGG 1161780 Query 349738 GCTTGATAAAATGAGTGACCA-------AGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790 | || || | || |||| ||| || ||| | || || ||||| || || | Sbjct 1161779 CTTGGACAAGAAAGGT-ACCAGGGCAGGAGAGAAGAATGTGCTCATCTTTGACTTGGGAG 1161721 Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850 | || ||||||||||| || | || || | || || || || ||||| || || | | Sbjct 1161720 GGGGCACTTTTGATGTGTCCATCCTTACTATCGAGGATGGCATCTTTGAGGTGAAGTCCA 1161661 Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG 349910 | |||||||| || ||||| ||||| || || ||||| || || | || ||||||| Sbjct 1161660 CAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTTG 1161601 Query 349911 TTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGT 349969 | ||||||| || ||| |||| || ||| |||| | || ||||| || | Sbjct 1161600 TGGAAGAATTCAAACGT-AAGCACAAGCGTGACATTGCTGGCAACAAGCGAGCAGTGAGG 1161542 Query 349970 CGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC-CTTATCATCTACTACCCAAACCTC 350028 || || | || || ||||| | || ||||| | || | | ||| | || ||| | Sbjct 1161541 CGACTGCGTACAGCTTGTGAGAGAGCAAAGCGCACTCTCAGC-TCTTCCACACAAGCTAG 1161483 Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088 ||||| ||||| || ||| ||| |||| || |||| | |||||||||||||| || Sbjct 1161482 CATTGAGATTGACTCCCTTTTTGAGGGCATTGACTTCTACACCTCTATTACACGTGCCCG 1161423 Query 350089 GTTTGAAGAATT--ATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTA 350146 || || || | ||| | ||||| || | | || |||| || ||||| || | Sbjct 1161422 CTTCGAGGAGCTCAATGCA--GATCTCTTCCGTGGCACCCTGGAACCAGTGGAGAAGGCT 1161365 Query 350147 TTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCT 350206 | ||||| || | ||| ||||| | || | || | || ||||| || Sbjct 1161364 CTGCGTGATGCTAAGCTAGACAAGGGCCAGATCCAGGAGATTGTGCTGGTGGGTGGCTCC 1161305 Query 350207 ACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTC 350265 || ||||| || || | ||| || | ||| || || || ||||||||||| | | | Sbjct 1161304 ACTCGTATCCCCAAGATCCAAAAGCTTCTACAGGACTTCTTCAATGGCAAAGAGCTCAAC 1161245 Query 350266 TAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT-TT 350324 ||| | || || || ||||| ||||||||||||||||||||||| || ||| |||| | Sbjct 1161244 AAGAGC-ATCAACCCTGATGAGGCTGTTGCATATGGTGCTGCTGTGCAAGCAGCTATCCT 1161186 Query 350325 TATCTGGAAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCAC 350381 ||| ||| | ||| ||| | | || | ||| | | || | ||||| || || | Sbjct 1161185 TAT-GGGAGACAAG---TCTGAGAATGTGCAGGATTTGCTGCTGTTGGATGTCACCCCTC 1161130 Query 350382 TTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTA 350441 | || | || | || || |||||| ||| ||||||| ||| || | |||| | Sbjct 1161129 TGTCTTTGGGCATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCGCAATACCA 1161070 Query 350442 CTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAA 350501 | | || || ||| | | || || || | || | | || || ||| ||| || Sbjct 1161069 CCATTCCCACCAAACAAACTCAGACCTTCACCACCTACTCTGACAACCAG--AGCAGTGT 1161012 Query 350502 C--AATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGA 350559 | | || || | ||| ||||| | || || || || || || ||| || | Sbjct 1161011 CCTGGTCCAGGTGTATGAGGGTGAGAGGGCCATGACGAAGGACAACAACTTACTGGGCAA 1160952 Query 350560 ATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTT 350619 |||| ||||| | || || ||| || | ||||| || ||||| || ||| |||| Sbjct 1160951 ATTTGACCTAACAGGCATCCCCCCAGCACCCCGTGGAGTCCCCCAGATCGAGGTCACTTT 1160892 Query 350620 CGATATTGATTCAAATGGTATTTTAAATGT 350649 || |||||| | |||||||| | ||||| Sbjct 1160891 TGACATTGATGCCAATGGTATCCTGAATGT 1160862 >seq3246 Length=3797831 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || ||||| ||||| || || || || || ||||| | || || |||||| Sbjct 817041 AGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCT 817100 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | |||||||| || ||||| ||||| || ||| Sbjct 817101 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 817160 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || || || || || | ||| Sbjct 817161 TGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 817220 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 817221 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 817252 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || ||||| ||||| || || || || || ||||| | || || |||||| Sbjct 817269 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCT 817328 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | |||||||| || ||||| ||||| || ||| Sbjct 817329 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 817388 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || || || || || | ||| Sbjct 817389 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 817448 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 817449 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 817480 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || ||||| ||||| || || || || || || || | || || ||||| Sbjct 816813 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCC 816872 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | |||||||| || ||||| ||||| || ||| Sbjct 816873 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 816932 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || || || || || | ||| Sbjct 816933 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 816992 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 816993 TTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 817024 >seq31254 Length=8300616 Score = 104 bits (114), Expect = 7e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || ||||| | || || |||||| Sbjct 739595 AGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 739536 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | || || || || || || ||||| || || Sbjct 739535 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCGGGGGGGATGCCTTCCTTGTCT 739476 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | ||| || || || || || || | ||| Sbjct 739475 TGGATCTTGGCCTTGACATTCTCTATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTC 739416 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || || ||||| |||||||| Sbjct 739415 TTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 739384 Score = 100 bits (110), Expect = 9e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || || || || || || || || ||||| | || || |||||| Sbjct 739367 AGGACAAGTTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 739308 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | || || || || || || ||||| || || Sbjct 739307 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCGGGGGGGATGCCTTCCTTGTCT 739248 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | ||| || || || || || || | ||| Sbjct 739247 TGGATCTTGGCCTTGACATTCTCTATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTC 739188 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || || || || ||||||||| Sbjct 739187 TTGCCTGTCAGGGTCTTCACGAAGATCTGCATT 739155 >seq4520 Length=4621051 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| | || | |||||||| ||||| || ||||| ||| | || ||| || | Sbjct 3550463 ATTGATGAGATTGTCCTTGTTGGTGGCTCTACTCGCATTCCCAAAATACAGCAGCTAGTT 3550404 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || ||||| ||||| |||||| | |||||||||||||| ||||| || Sbjct 3550403 AAGGAGTTCTTCAATGGGAAAGAGCCTTCTCGTGGCATTAATCCAGATGAGGCTGTGGCC 3550344 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||| ||||| ||||| Sbjct 3550343 TATGGTGCAGCTGTCCAGGC 3550324 Score = 96.9 bits (106), Expect = 1e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 349601 GTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACA 349660 || ||| |||||||| |||||||||||||||| || |||||||| ||||| || || Sbjct 3551422 GTTACTCATGCTGTTGTTACTGTACCAGCCTACTTCAATGATGCTCAGCGCCAGGCTACG 3551363 Query 349661 AAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 |||||||| |||| ||||| || | ||||| | ||||| |||||||| || Sbjct 3551362 AAAGATGCCGGCACTATTGCTGGACTCAATGTAATGAGAATTATTAATGAGCC 3551310 Score = 95.1 bits (104), Expect = 4e-14 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| | || || ||| || || || || || ||| Sbjct 3551223 ACGGCTGCTGCCATTGCCTATGGATTGGACAA---GAGAGAGGGTGAGAAGAACATCCTT 3551167 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| || |||||||| ||||| ||||| || || || ||| |||| | ||| | Sbjct 3551166 GTGTTTGACTTGGGTGGTGGAACTTTCGATGTCTCCCTCCTGACAATTGACAACGGAGTC 3551107 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || ||| ||||| || || || ||||||||||| ||||| Sbjct 3551106 TTTGAAGTTGTGGCGACTAACGGTGACACTCACCTGGGTGGAGAAGACTTTGA 3551054 Score = 87.8 bits (96), Expect = 5e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| || |||||||||||||| || ||||| |||||||| ||||| |||||| | Sbjct 3550322 CAGCCTGGACAGCTGCACCATAGGCCACAGCCTCATCTGGATTAATGCCACGAGAAGGCT 3550381 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 |||| ||||| || || || || | || || ||||| ||||| | ||| || |||| Sbjct 3550382 CTTTCCCATTGAAGAACTCCTTAACTAGCTGCTGTATTTTGGGAATGCGAGTAGAGCCAC 3550441 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | || | ||||| || | | || | | | ||||||| | ||||| | Sbjct 3550442 CAACAAGGACAATCTCATCAATGTCAGACTTCTTTAGGTCAGAATCTTCCAGTACTTTCT 3550501 Query 183430 CAACAGGGTCCATAGT 183445 |||||| | |||||| Sbjct 3550502 GAACAGGCTTCATAGT 3550517 >seq2862 Length=2185873 Score = 93.3 bits (102), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||||||||| ||||| ||||||| || || |||||||| || || || |||||||| | Sbjct 294420 CTTTTTGAATGTTATAGTCAGATAGGGTACGTCCATCTTCTAGCTGCTTGCCAGCAAAAA 294479 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || ||||||||||||||||| ||| Sbjct 294480 TCAGTCGCTGCTGATCAGGAGGAATGCCT 294508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514647628686962