Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq3492 96.9 3e-15 >seq3492 Length=1229997 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||| || ||||||||||||||||| || || || |||||||| || ||||| Sbjct 1206527 CCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATGTTGAAAGGCACT 1206586 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTA-TTTTGTGACAC 111896 || || ||||||||||| || || || || ||||| || || | || | | ||| || Sbjct 1206587 CCCAGTCCCATATCTCCAGACCTCTGGTAGAGCTGGCAAGACAATTCACCACTCTGA-AC 1206645 Query 111897 ATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 ||| || || || || |||| || |||||||| |||||| Sbjct 1206646 ATAGAACTGGCACAGGGCATGGCATGGAGGCAAAGCCATC 1206685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391796304736402