Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq535 91.5 2e-13 seq2132 86.0 7e-12 >seq535 Length=245707 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 |||||||| |||| ||||||||||| | || |||| |||||| || ||||||||||| Sbjct 89866 CCGATGCCGCCGGCGGACTTGGAGATGAGGGCACACTGCTTGAGGGTGTCGTAGATGCCT 89807 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 ||||| |||||||||||| | |||||||||||| Sbjct 89806 TCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCAGCT 89769 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||| ||||| || |||||||| |||||||| || ||||||||||| || |||||| Sbjct 89769 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTCAAG 89828 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 |||| || | ||||||||||| |||| || ||||| Sbjct 89829 CAGTGTGCCCTCATCTCCAAGTCCGCCGGCGGCATCGG 89866 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 79127 ACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACA 79186 ||||||||||||| | ||||| ||||||||||||| ||| |||| |||||||||| || Sbjct 94300 ACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCA 94241 Query 79187 TGTACGGCGTCCCGGTCTC 79205 |||| || || || ||||| Sbjct 94240 TGTAGGGGGTGCCAGTCTC 94222 >seq2132 Length=409716 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| || ||||||||||||||||| || | || |||||||| || ||| | || Sbjct 89763 GTGGAGGGGATCTTCTTCTCTGGCTCTTTTGCCTCCATCTTCTGGCTGAAGAAGAGAGGG 89822 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||||| ||||||| ||||||||||||||||| Sbjct 89823 CTGATGCCTGGCCTGACCTTCTCCAACGAGCTGAT 89857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548310505073760