Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1625 102 9e-17 seq535 91.5 2e-13 seq1619 89.7 6e-13 seq3870 87.8 2e-12 >seq1625 Length=261553 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | ||||| ||||| ||||| || || ||||| Sbjct 240675 GTGAAGATGTATCGAGGGCTGGCGGAGTCCTTCCCACCGTGCAGCCTGGTGCCGAACTGC 240616 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 ||| ||||| || | ||||||||||||| ||||||||| ||||||||||| || Sbjct 240615 CCAATGGGCTGCAGCAAGTTGAGGTTGTTGCTGCCCACGAAGTTCTGAGCCAAGTT 240560 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| ||| || | ||||| ||||| || | || ||||| || Sbjct 240675 GTGAAGATGTATCGAGGGCTGGCGGAGTCCTTCCCACCGTGCAGCCTGGTGCCGAACTGC 240616 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||| | |||| || | ||| ||||||||| |||||| ||||| ||||||||||||| Sbjct 240615 CCAATGGGCTGCAGCAAGTTGAGGTTGTTGCTGCCCACGAAGTTCTGAGCCAAGTTGA 240558 >seq535 Length=245707 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||||||| || |||||||| ||| ||||| ||||||||||| || |||||| Sbjct 89769 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTCAAG 89828 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 ||||||||| ||||||||||| | || || ||||| Sbjct 89829 CAGTGTGCCCTCATCTCCAAGTCCGCCGGCGGCATCGG 89866 >seq1619 Length=3721367 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| ||||| || | |||||| || || | || |||||||| | || | ||||||| Sbjct 1314464 TCATCCCTGCTAATAAGTTCATTGGAGAAGGTCAGTCCAGGCATCAAGCCTCTCTTCTTC 1314523 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||||||||| ||| |||||||| ||||||||||||||| || |||||||| Sbjct 1314524 AGCCAAAAGATAGCAGCAAAGGAACCCGAGAAGAAGATGCCTTCAACTGCAGCAAAGGCA 1314583 Query 74892 AC 74893 || Sbjct 1314584 AC 1314585 >seq3870 Length=355987 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| || |||| ||| ||||||||||| |||||| ||| | ||||| || || Sbjct 96105 AGTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTG 96046 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | || | | || || | ||||| || |||||||| |||||||||||||| Sbjct 96045 ACCAATAGGTTGTAGCAGATTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGAC 95986 Query 117424 AATCGT 117429 ||| || Sbjct 95985 AATAGT 95980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547002216389200