Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3246 187 3e-42 seq31254 150 2e-31 seq2862 84.2 2e-11 >seq3246 Length=3797831 Score = 187 bits (206), Expect = 3e-42 Identities = 172/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||| ||||| ||| | || Sbjct 817252 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 817193 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| ||||||| || || ||||||||||| || ||||| ||||| ||| Sbjct 817192 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 817133 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| ||| ||||| | ||||| || Sbjct 817132 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTACAAC 817073 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| |||||||| || || || ||||||| Sbjct 817072 ATCCAGAAGGAGTCCACTCTCCACCTTGTGCTGCGTCT 817035 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||| ||| | || Sbjct 817024 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 816965 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || ||||| ||||| ||| Sbjct 816964 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 816905 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || ||||||| ||| ||||| | ||||| || Sbjct 816904 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTTTCCGACTACAAC 816845 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || ||| |||| || | ||||| Sbjct 816844 ATCCAGAAGGAGTCCACTCTCCACCTTGTCCTGCGCCTCAGGGGTGG 816798 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||| ||| | || Sbjct 817480 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 817421 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || ||||| ||||| ||| Sbjct 817420 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 817361 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| ||| ||||| | ||||| || Sbjct 817360 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTACAAC 817301 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || ||| ||||||| | ||||| Sbjct 817300 ATCCAGAAGGAGTCCACTCTCCACCTTGTCCTGCGTCTCAGGGGTGG 817254 >seq31254 Length=8300616 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | | Sbjct 739155 AATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTAGAGCCCAG 739214 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||||| || || || |||||||| || || || || ||||| Sbjct 739215 TGACACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCCGACCA 739274 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 739275 ACAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 739334 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || || ||| |||| || | ||||| Sbjct 739335 CATCCAGAAGGAATCCACCCTGCAACTTGTCCTGCGCCTGAGGGGTGG 739382 >seq2862 Length=2185873 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| || |||||||| || ||||||||||| ||||| || || |||| ||| Sbjct 294507 GGCATTCCTCCTGATCAGCAGCGACTGATTTTTGCTGGCAAGCAGCTAGAAGATGGACGT 294448 Query 27568 ACCCTAGCAGACTATAATGTCCAAAA 27593 |||||| | |||||||| | ||||| Sbjct 294447 ACCCTATCTGACTATAACATTCAAAA 294422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570087593984480