Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq853 152 7e-32 >seq853 Length=4682424 Score = 152 bits (168), Expect = 7e-32 Identities = 298/434 (69%), Gaps = 6/434 (1%) Strand=Plus/Plus Query 13611 TACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATC-TCGTGAG 13669 ||| ||||||||||| |||||| |||||| | | |||| || | || ||| Sbjct 2753312 TACCTGAACATGACGAGGGACTGCAGCGCCTTCAGGGA-GACACGGCGGTTCATCGAATT 2753370 Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||||| | || || | ||||| |||||||||||||| || || |||||| |||| Sbjct 2753371 CCCCCTGAGTCAAGAGGAAGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACAACAA 2753430 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 || || ||||| ||||| || ||| || || |||| || |||||||| | |||||| | Sbjct 2753431 AATTGAAATGTTTGAGCGGCTTCTGCGGTCCGTCTATGCTCCGCAGAATGTGTACTGCAT 2753490 Query 13790 CCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGG-GGC-GTCTCGGCCATCGCCAGG 13847 |||| | ||| ||||||| | | ||| | || ||| || |||||| || Sbjct 2753491 CCACATTGACCGCAAGTCCCCAGCTGCCTTC--CAGGAGGCTGTACGGGCCATAGCAGCT 2753548 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 |||||||| || || |||| || ||| | | ||||| || | ||||||| Sbjct 2753549 TGCTTCCCCAATGTCTTTGTGGCTAGCCATCTGGAAAAGGTGGTCTATGCCTCCTGGTCC 2753608 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 || ||||||| ||||||| ||||||| ||||||| |||||| ||| | Sbjct 2753609 CGGTTGCAGGCTGACCTCAACTGCATGCAGGACCTGTTACAGAGCCCCGTGCCATGGCGC 2753668 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 || || |||||| || || | || || || |||||||||| |||||| | || Sbjct 2753669 TATCTCCTCAACACCTGTGGCACCGATTTTCCCATCAAGACCAATGGCGAGATCATCCGT 2753728 Query 14028 GCGCTGAAGGCCCT 14041 || ||||||| ||| Sbjct 2753729 GCCCTGAAGGTCCT 2753742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658481847063040