Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq3492 114 1e-20 seq643 82.4 6e-11 >seq3492 Length=1229997 Score = 114 bits (126), Expect = 1e-20 Identities = 126/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || ||||| || || |||||||| ||||| || || |||||||| ||||| || || Sbjct 1206524 AGGCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATGTTGAAAGGC 1206583 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT- 30060 || || || ||||| || || ||||||||||||||||| || || | || || | || Sbjct 1206584 ACTCCCAGTCCCATATCTCCAGACCTCTGGTAGAGCTGGCAAGACAATTCACC-ACTCTG 1206642 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| |||| ||| ||||| ||||| | |||||| || Sbjct 1206643 AACATAGAACTGGCACAGGGCATGGCATGGAGGCAAAGCCATCAG 1206687 Score = 113 bits (124), Expect = 4e-20 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| || |||||||||||||| || || || ||||||| || Sbjct 1209757 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 1209816 Query 30283 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||||| || || ||||| ||| ||| ||| |||| || || | ||| || || || | Sbjct 1209817 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGGGATCCATTAGCAT 1209875 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||| ||||| || || || ||||||||||||| | ||||| || || Sbjct 1209876 CCCAAATCTTCACTCCTTTGGCAGAGAGCTCTTTAGCATTTGTAGAACC 1209924 >seq643 Length=2203898 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| |||| || || |||||| | | || | |||||| || || Sbjct 219348 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAGGGACGATTCTTCTCAGGA 219407 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||| |||||||||| | | ||||| || ||| Sbjct 219408 ATGGAGAACCAGGTTTTTTTACCCATTATGAGTGCATTCTGTTTACCT 219455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406155633067368