Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3246 102 5e-17 >seq3246 Length=3797831 Score = 102 bits (112), Expect = 5e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||||| || | ||||||||| |||||| || ||||| || || || Sbjct 817253 GCCACCCCTGAGACGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 817312 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| || || || || Sbjct 817313 GAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGG 817372 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || |||||||| |||||| | || || | ||| ||||| | ||||| Sbjct 817373 AATGCCTTCCTTGTCCTGGATCTTG-GCCTTCACATTCTCAATGGTGTCACTGGGCTCCA 817431 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 | |||| ||| || || || || || | || |||||||| |||||||||||||| Sbjct 817432 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAT 817486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314609716938182